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Theoretical Model (Jmol Viewer)

Title :   THEORETICAL MODEL OF THE CATALYTIC DOMAIN OF CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 7B

Authors :   S. Ramadevi, S. Sunitatajne

Date :   06 Jun 02 (Deposition) - 26 Jun 02 (Release) - 20 Nov 02 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : A

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Ramadevi, S. Sunitatajne
Theoretical Model Of The Catalytic Domain Of Camp-Specific 3', 5'-Cyclic Phosphodiesterase 7B
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 7B
	Chains	:	A
	EC Number	:	3.1.4.17
	Fragment	:	RESIDUES 1-330
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS


Theoretical Model	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1LXW)

(no "Site" information available for 1LXW)

(no "SS Bond" information available for 1LXW)

Theoretical Model

No.	Residues
1	Gly A:291	-	Asn A:292
2	Ser A:296	-	Glu A:297
3	Ser A:323	-	Ser A:324

(no "SAP(SNP)/Variant" information available for 1LXW)

Theoretical Model (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDEASE_I	PS00126	3'5'-cyclic nucleotide phosphodiesterases signature.	PDE7B_HUMAN	213-224	1	A:110-121

Theoretical Model (10, 10)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000308191	1	ENSE00001445635	chr6:136172834-136173157	324	PDE7B_HUMAN	1-7	7	0	-	-
1.2	ENST00000308191	2	ENSE00001365942	chr6:136268602-136268662	61	PDE7B_HUMAN	8-28	21	0	-	-
1.4	ENST00000308191	4	ENSE00001124687	chr6:136429869-136429952	84	PDE7B_HUMAN	28-56	29	0	-	-
1.5	ENST00000308191	5	ENSE00001124680	chr6:136468489-136468640	152	PDE7B_HUMAN	56-106	51	1	A:1-3	3
1.6b	ENST00000308191	6b	ENSE00001124674	chr6:136470225-136470288	64	PDE7B_HUMAN	107-128	22	1	A:4-25	22
1.7	ENST00000308191	7	ENSE00001124667	chr6:136472298-136472393	96	PDE7B_HUMAN	128-160	33	1	A:25-57	33
1.8	ENST00000308191	8	ENSE00002097427	chr6:136475213-136475313	101	PDE7B_HUMAN	160-193	34	1	A:57-90	34
1.9a	ENST00000308191	9a	ENSE00001124656	chr6:136476765-136476896	132	PDE7B_HUMAN	194-237	44	1	A:91-134	44
1.10	ENST00000308191	10	ENSE00001124649	chr6:136494935-136495026	92	PDE7B_HUMAN	238-268	31	1	A:135-165	31
1.11	ENST00000308191	11	ENSE00001124644	chr6:136500135-136500279	145	PDE7B_HUMAN	268-316	49	1	A:165-213	49
1.12	ENST00000308191	12	ENSE00001124639	chr6:136502365-136502461	97	PDE7B_HUMAN	317-349	33	1	A:214-246	33
1.13	ENST00000308191	13	ENSE00001124631	chr6:136508174-136508254	81	PDE7B_HUMAN	349-376	28	1	A:246-273	28
1.14b	ENST00000308191	14b	ENSE00001904471	chr6:136512752-136516712	3961	PDE7B_HUMAN	376-450	75	1	A:273-330	58

Theoretical Model

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:330
 aligned with PDE7B_HUMAN | Q9NP56 from UniProtKB/Swiss-Prot  Length:450

    Alignment length:330
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433
          PDE7B_HUMAN   104 QARHMLSKVGMWDFDIFLFDRLTNGNSLVTLLCHLFNTHGLIHHFKLDMVTLHRFLVMVQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKLASFLTPLDIMLGLLAAAAHDVDHPGVNQPFLIKTNHHLANLYQNMSVLENHHWRSTIGMLRESRLLAHLPKEMTQDIEQQLGSLILATDINRQNEFLTRLKAHLHNKDLRLEDAQDRHFMLQIALKCADICNPCRIWEMSKQWSERVCEEFYRQGELEQKFELEISPLCNQQKDSIPSIQIGFMSYIVEPLFREWAHFTGNSTLSENMLGHLAHNKAQWKSLLPRQHRSRGSSGSGPDH 433
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..............hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------PDEASE_I    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.5Exon 1.6b  PDB: A:4-25-------------------------------Exon 1.8  PDB: A:57-90            Exon 1.9a  PDB: A:91-134 UniProt: 194-237   Exon 1.10  PDB: A:135-165      ------------------------------------------------Exon 1.12  PDB: A:214-246        --------------------------Exon 1.14b  PDB: A:273-330 UniProt: 376-450 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.7  PDB: A:25-57           -----------------------------------------------------------------------------------------------------------Exon 1.11  PDB: A:165-213 UniProt: 268-316       --------------------------------Exon 1.13  PDB: A:246-273   --------------------------------------------------------- Transcript 1 (2)
                 1lxw A   1 QARHMLSKVGMWDFDIFLFDRLTNGNSLVTLLCHLFNTHGLIHHFKLDMVTLHRFLVMVQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKLASFLTPLDIMLGLLAAAAHDVDHPGVNQPFLIKTNHHLANLYQNMSVLENHHWRSTIGMLRESRLLAHLPKEMTQDIEQQLGSLILATDINRQNEFLTRLKAHLHNKDLRLEDAQDRHFMLQIALKCADICNPCRIWEMSKQWSERVCEEFYRQGELEQKFELEISPLCNQQKDSIPSIQIGFMSYIVEPLFREWAHFTGNSTLSENMLGHLAHNKAQWKSLLPRQHRSRGSSGSGPDH 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1LXW)

(no "CATH Domain" information available for 1LXW)

(no "Pfam Domain" information available for 1LXW)

Theoretical Model(hide GO term definitions)

Chain A (PDE7B_HUMAN | Q9NP56)

molecular function
	GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate.
	GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008081	phosphoric diester hydrolase activity	Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
biological process
	GO:0006198	cAMP catabolic process	The chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).
	GO:0007268	chemical synaptic transmission	The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Theoretical Model
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1lxw)

	Sites
(no "Sites" information available for 1lxw)

	Cis Peptide Bonds
		Gly A:291 - Asn A:292	[ RasMol ]
		Ser A:296 - Glu A:297	[ RasMol ]
		Ser A:323 - Ser A:324	[ RasMol ]

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	3.1.4.17
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Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (10, 10)

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Gene Ontology (9, 9)

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