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(-) Description

Title :  CRYSTAL STRUCTURE OF CLEAVED PROTEIN C INHIBITOR
 
Authors :  J. A. Huntington, M. Kjellberg, J. Stenflo
Date :  09 May 02  (Deposition) - 11 Feb 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Serpin, Protease, Inhibitor, Heparin, Retinoic Acid, Protein C, Blood Clotting (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. A. Huntington, M. Kjellberg, J. Stenflo
Crystal Structure Of Protein C Inhibitor Provides Insights Into Hormone Binding And Heparin Activation
Structure V. 11 205 2003
PubMed-ID: 12575940  |  Reference-DOI: 10.1016/S0969-2126(02)00944-9

(-) Compounds

Molecule 1 - PLASMA SERINE PROTEASE INHIBITOR
    ChainsA, C, E, G
    FragmentN-TERMINAL FRAGMENT FROM ELASTASE CLEAVAGE, RESIDUES 30- 375
    OrganLIVER
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHUMAN PCI PURIFIED FROM DISCARDED BLOOD PLASMA.
    SynonymPCI;
PROTEIN C INHIBITOR;
PLASMINOGEN ACTIVATOR INHIBITOR-3
    TissueBLOOD
 
Molecule 2 - PLASMA SERINE PROTEASE INHIBITOR
    ChainsB, D, F, H
    FragmentC-TERMINAL FRAGMENT FROM ELASTASE CLEAVAGE, RESIDUES 376- 405
    OrganLIVER
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHUMAN PCI PURIFIED FROM DISCARDED BLOOD PLASMA.
    SynonymPCI;
PROTEIN C INHIBITOR;
PLASMINOGEN ACTIVATOR INHIBITOR-3
    TissueBLOOD

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric Unit (4, 17)
No.NameCountTypeFull Name
1IPA3Ligand/IonISOPROPYL ALCOHOL
2MAN3Ligand/IonALPHA-D-MANNOSE
3NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG8Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1IPA1Ligand/IonISOPROPYL ALCOHOL
2MAN-1Ligand/IonALPHA-D-MANNOSE
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG2Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1IPA1Ligand/IonISOPROPYL ALCOHOL
2MAN-1Ligand/IonALPHA-D-MANNOSE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1IPA-1Ligand/IonISOPROPYL ALCOHOL
2MAN-1Ligand/IonALPHA-D-MANNOSE
3NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG-1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 4 (3, 7)
No.NameCountTypeFull Name
1IPA1Ligand/IonISOPROPYL ALCOHOL
2MAN3Ligand/IonALPHA-D-MANNOSE
3NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARENDG A:2 , ASP A:228 , ASN A:230 , MET A:274BINDING SITE FOR RESIDUE NDG A 1
02AC2SOFTWARENDG A:1BINDING SITE FOR RESIDUE NDG A 2
03AC3SOFTWARENAG A:7 , ASN A:243BINDING SITE FOR RESIDUE NAG A 3
04AC4SOFTWARENAG A:3 , MAN G:5BINDING SITE FOR RESIDUE NAG A 7
05AC5SOFTWARENAG C:9 , ASN C:243 , SER E:84BINDING SITE FOR RESIDUE NDG C 8
06AC6SOFTWARENDG C:8 , GLN E:81BINDING SITE FOR RESIDUE NAG C 9
07AC7SOFTWARESER C:315 , ASN C:319BINDING SITE FOR RESIDUE NDG C 10
08AC8SOFTWAREASN C:230 , LYS C:270BINDING SITE FOR RESIDUE NDG C 357
09AC9SOFTWAREMAN G:5 , MAN G:6BINDING SITE FOR RESIDUE MAN G 4
10BC1SOFTWARENAG A:7 , MAN G:4BINDING SITE FOR RESIDUE MAN G 5
11BC2SOFTWAREMAN G:4 , ASP G:104 , GLN G:107 , LYS G:162 , LYS G:187 , ARG G:342BINDING SITE FOR RESIDUE MAN G 6
12BC3SOFTWAREGLN A:81 , LYS A:82 , HOH A:921 , ASN G:243 , NDG G:358 , ASP H:375 , ASN H:376BINDING SITE FOR RESIDUE NDG G 357
13BC4SOFTWAREGLN A:81 , NDG G:357 , ASN H:376BINDING SITE FOR RESIDUE NDG G 358
14BC5SOFTWAREARG G:229 , ASN G:230BINDING SITE FOR RESIDUE NDG G 359
15BC6SOFTWARELYS A:187 , ASP A:337 , ARG A:342BINDING SITE FOR RESIDUE IPA A 901
16BC7SOFTWAREASP C:337 , ARG C:342BINDING SITE FOR RESIDUE IPA C 902
17BC8SOFTWARELYS G:187 , ASP G:337 , GLY G:340 , ARG G:342BINDING SITE FOR RESIDUE IPA G 903

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LQ8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LQ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (7, 28)

Asymmetric Unit (7, 28)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_007100A55VIPSP_HUMANPolymorphism6118A/C/E/GA36V
2UniProtVAR_013081S64NIPSP_HUMANPolymorphism6115A/C/E/GN45N
3UniProtVAR_013082G94VIPSP_HUMANPolymorphism2069976A/C/E/GG75V
4UniProtVAR_007101K105EIPSP_HUMANPolymorphism6119A/C/E/GK86E
5UniProtVAR_013083L115PIPSP_HUMANPolymorphism2069999A/C/E/GL96P
6UniProtVAR_013900P121AIPSP_HUMANPolymorphism6120A/C/E/GP102A
7UniProtVAR_013084G217RIPSP_HUMANPolymorphism6114A/C/E/GG198R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (7, 7)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_007100A55VIPSP_HUMANPolymorphism6118AA36V
2UniProtVAR_013081S64NIPSP_HUMANPolymorphism6115AN45N
3UniProtVAR_013082G94VIPSP_HUMANPolymorphism2069976AG75V
4UniProtVAR_007101K105EIPSP_HUMANPolymorphism6119AK86E
5UniProtVAR_013083L115PIPSP_HUMANPolymorphism2069999AL96P
6UniProtVAR_013900P121AIPSP_HUMANPolymorphism6120AP102A
7UniProtVAR_013084G217RIPSP_HUMANPolymorphism6114AG198R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (7, 7)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_007100A55VIPSP_HUMANPolymorphism6118CA36V
2UniProtVAR_013081S64NIPSP_HUMANPolymorphism6115CN45N
3UniProtVAR_013082G94VIPSP_HUMANPolymorphism2069976CG75V
4UniProtVAR_007101K105EIPSP_HUMANPolymorphism6119CK86E
5UniProtVAR_013083L115PIPSP_HUMANPolymorphism2069999CL96P
6UniProtVAR_013900P121AIPSP_HUMANPolymorphism6120CP102A
7UniProtVAR_013084G217RIPSP_HUMANPolymorphism6114CG198R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (7, 7)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_007100A55VIPSP_HUMANPolymorphism6118EA36V
2UniProtVAR_013081S64NIPSP_HUMANPolymorphism6115EN45N
3UniProtVAR_013082G94VIPSP_HUMANPolymorphism2069976EG75V
4UniProtVAR_007101K105EIPSP_HUMANPolymorphism6119EK86E
5UniProtVAR_013083L115PIPSP_HUMANPolymorphism2069999EL96P
6UniProtVAR_013900P121AIPSP_HUMANPolymorphism6120EP102A
7UniProtVAR_013084G217RIPSP_HUMANPolymorphism6114EG198R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (7, 7)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_007100A55VIPSP_HUMANPolymorphism6118GA36V
2UniProtVAR_013081S64NIPSP_HUMANPolymorphism6115GN45N
3UniProtVAR_013082G94VIPSP_HUMANPolymorphism2069976GG75V
4UniProtVAR_007101K105EIPSP_HUMANPolymorphism6119GK86E
5UniProtVAR_013083L115PIPSP_HUMANPolymorphism2069999GL96P
6UniProtVAR_013900P121AIPSP_HUMANPolymorphism6120GP102A
7UniProtVAR_013084G217RIPSP_HUMANPolymorphism6114GG198R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.IPSP_HUMAN382-392
 
 
 
  4B:363-373
D:363-373
F:363-373
H:363-373
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.IPSP_HUMAN382-392
 
 
 
  1B:363-373
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.IPSP_HUMAN382-392
 
 
 
  1-
D:363-373
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.IPSP_HUMAN382-392
 
 
 
  1-
-
F:363-373
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.IPSP_HUMAN382-392
 
 
 
  1-
-
-
H:363-373

(-) Exons   (4, 20)

Asymmetric Unit (4, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003295971ENSE00001765110chr14:95047731-9504782797IPSP_HUMAN-00--
1.2ENST000003295972ENSE00001514145chr14:95047952-9504804796IPSP_HUMAN-00--
1.3aENST000003295973aENSE00001382261chr14:95053683-95054318636IPSP_HUMAN1-2072074A:26-188
-
C:27-188
-
E:26-188
-
G:26-188
-
163
-
162
-
163
-
163
-
1.4ENST000003295974ENSE00001098004chr14:95056378-95056648271IPSP_HUMAN207-297914A:188-278
-
C:188-278
-
E:188-278
-
G:188-278
-
91
-
91
-
91
-
91
-
1.5ENST000003295975ENSE00001098000chr14:95057086-95057233148IPSP_HUMAN297-346504A:278-327
-
C:278-327
-
E:278-327
-
G:278-327
-
50
-
50
-
50
-
50
-
1.6ENST000003295976ENSE00001376792chr14:95058394-950594571064IPSP_HUMAN347-406608A:328-354
B:359-387
C:328-354
D:359-387
E:328-354
F:360-387
G:328-355
H:359-387
27
29
27
29
27
28
28
29

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:329
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:329
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364         
           IPSP_HUMAN    45 RRDFTFDLYRALASAAPSQSIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFR 373
               SCOP domains d1lq8.1 A:,B: Protein C inhibitor                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1lq8A02 A:26-189,A:285-338 Antithrombin, subunit I, domain 2                                                                                                        1lq8A01 A:190-284,A:344-354 Alpha-1-antitrypsin, domain 1                                      1lq8A02 A:26-189,A:285-338                            -----1lq8A01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.......eeeeeeeeeeee.....hhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh..............eeeeeeeeeeeeee.....hhhhheeeeee.....eeeeeeeeeeeeeee.ee....eeeeeee.....eeeeeee...hhhhhhhhhhhhhhhhhhhhheeeeeeeeee.eeeeeeeehhhhhhhhh.hhhhh..............eeeeeeeeeeeee...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------V--------N-----------------------------V----------E---------P-----A-----------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: A:26-188 UniProt: 1-207 [INCOMPLETE]                                                                                                               -----------------------------------------------------------------------------------------Exon 1.5  PDB: A:278-327 UniProt: 297-346         Exon 1.6  PDB: A:328-354    Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.4  PDB: A:188-278 UniProt: 207-297                                                  ---------------------------------------------------------------------------- Transcript 1 (2)
                 1lq8 A  26 RRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFR 354
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345         

Chain B from PDB  Type:PROTEIN  Length:29
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:29
                                   387       397         
           IPSP_HUMAN   378 NSQRLVFNRPFLMFIVDNNILFLGKVNRP 406
               SCOP domains d1lq8.1 A:,B:                 SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeeee...eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----SERPIN     -------------- PROSITE
           Transcript 1 (1) Exon 1.6  PDB: B:359-387      Transcript 1 (1)
           Transcript 1 (2) ----------------------------- Transcript 1 (2)
                 1lq8 B 359 NSQRLVFNRPFLMFIVDNNILFLGKVNRP 387
                                   368       378         

Chain C from PDB  Type:PROTEIN  Length:328
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:328
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365        
           IPSP_HUMAN    46 RDFTFDLYRALASAAPSQSIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFR 373
               SCOP domains d1lq8.2 C:,D: Protein C inhibitor                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1lq8C02 C:27-189,C:285-338 Antithrombin, subunit I, domain 2                                                                                                       1lq8C01 C:190-284,C:344-354 Alpha-1-antitrypsin, domain 1                                      1lq8C02 C:27-189,C:285-338                            -----1lq8C01     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhh.hhhhhhhhhhh........hhhhhhhhhhhhhhh.......eeeeeeeeeeee.....hhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh..............eeeeeeeeeeeeee..........eeeeee.....eeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeee...hhhhhhhhhhhhhhhhhhh..eeeeeeeeee.eeeeeeeehhhhhhhhh.hhhhh..............eeeeeeeeeeeee...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------V--------N-----------------------------V----------E---------P-----A-----------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: C:27-188 UniProt: 1-207 [INCOMPLETE]                                                                                                              -----------------------------------------------------------------------------------------Exon 1.5  PDB: C:278-327 UniProt: 297-346         Exon 1.6  PDB: C:328-354    Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.4  PDB: C:188-278 UniProt: 207-297                                                  ---------------------------------------------------------------------------- Transcript 1 (2)
                 1lq8 C  27 RDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFR 354
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346        

Chain D from PDB  Type:PROTEIN  Length:29
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:29
                                   387       397         
           IPSP_HUMAN   378 NSQRLVFNRPFLMFIVDNNILFLGKVNRP 406
               SCOP domains d1lq8.2 C:,D:                 SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeeee...eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----SERPIN     -------------- PROSITE
           Transcript 1 (1) Exon 1.6  PDB: D:359-387      Transcript 1 (1)
           Transcript 1 (2) ----------------------------- Transcript 1 (2)
                 1lq8 D 359 NSQRLVFNRPFLMFIVDNNILFLGKVNRP 387
                                   368       378         

Chain E from PDB  Type:PROTEIN  Length:329
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:329
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364         
           IPSP_HUMAN    45 RRDFTFDLYRALASAAPSQSIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFR 373
               SCOP domains d1lq8.3 E:,F: Protein C inhibitor                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1lq8E02 E:26-189,E:285-338 Antithrombin, subunit I, domain 2                                                                                                        1lq8E01 E:190-284,E:344-354 Alpha-1-antitrypsin, domain 1                                      1lq8E02 E:26-189,E:285-338                            -----1lq8E01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh....eeehhhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhhhh...........eeeeeeee.....hhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhh................eeeeeeeeeeee.....hhhhheeeeeeee..eeeeeeeeeeeee....ee....eeeeeee.....eeeeeee...hhhhhhhhhhhhhhhhhhhh....eeeeeee.eeeeeeeehhhhhhhhh.hhhhh.............eeeeeeeeeeeeeee..eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------V--------N-----------------------------V----------E---------P-----A-----------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: E:26-188 UniProt: 1-207 [INCOMPLETE]                                                                                                               -----------------------------------------------------------------------------------------Exon 1.5  PDB: E:278-327 UniProt: 297-346         Exon 1.6  PDB: E:328-354    Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.4  PDB: E:188-278 UniProt: 207-297                                                  ---------------------------------------------------------------------------- Transcript 1 (2)
                 1lq8 E  26 RRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFR 354
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345         

Chain F from PDB  Type:PROTEIN  Length:28
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:28
                                   388       398        
           IPSP_HUMAN   379 SQRLVFNRPFLMFIVDNNILFLGKVNRP 406
               SCOP domains d1lq8.3 E:,F:                SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .eeee....eeeeee...eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---SERPIN     -------------- PROSITE
           Transcript 1 (1) Exon 1.6  PDB: F:360-387     Transcript 1 (1)
           Transcript 1 (2) ---------------------------- Transcript 1 (2)
                 1lq8 F 360 SQRLVFNRPFLMFIVDNNILFLGKVNRP 387
                                   369       379        

Chain G from PDB  Type:PROTEIN  Length:330
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:330
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
           IPSP_HUMAN    45 RRDFTFDLYRALASAAPSQSIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRS 374
               SCOP domains d1lq8.4 G:,H: Protein C inhibitor                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1lq8G02 G:26-189,G:285-338 Antithrombin, subunit I, domain 2                                                                                                        1lq8G01 G:190-284,G:344-355 Alpha-1-antitrypsin, domain 1                                      1lq8G02 G:26-189,G:285-338                            -----1lq8G01      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh........eeeeeeeeeeee.....hhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhh................eeeeeeeeeeee.....hhhhheeeeee.....eeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeee...hhhhhhhhhhhhhhhhhhhhheeeeeeeeee.eeeeeeee.hhhhhhhh.hhhhh..............eeeeeeeeeeeee...eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------V--------N-----------------------------V----------E---------P-----A-----------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: G:26-188 UniProt: 1-207 [INCOMPLETE]                                                                                                               -----------------------------------------------------------------------------------------Exon 1.5  PDB: G:278-327 UniProt: 297-346         Exon 1.6  PDB: G:328-355     Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.4  PDB: G:188-278 UniProt: 207-297                                                  ----------------------------------------------------------------------------- Transcript 1 (2)
                 1lq8 G  26 RRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRS 355
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355

Chain H from PDB  Type:PROTEIN  Length:29
 aligned with IPSP_HUMAN | P05154 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:29
                                   387       397         
           IPSP_HUMAN   378 NSQRLVFNRPFLMFIVDNNILFLGKVNRP 406
               SCOP domains d1lq8.4 G:,H:                 SCOP domains
               CATH domains ----------------------------- CATH domains
           Pfam domains (1) Serpin-1lq8H01 H:359-387      Pfam domains (1)
           Pfam domains (2) Serpin-1lq8H02 H:359-387      Pfam domains (2)
           Pfam domains (3) Serpin-1lq8H03 H:359-387      Pfam domains (3)
           Pfam domains (4) Serpin-1lq8H04 H:359-387      Pfam domains (4)
           Pfam domains (5) Serpin-1lq8H05 H:359-387      Pfam domains (5)
           Pfam domains (6) Serpin-1lq8H06 H:359-387      Pfam domains (6)
           Pfam domains (7) Serpin-1lq8H07 H:359-387      Pfam domains (7)
           Pfam domains (8) Serpin-1lq8H08 H:359-387      Pfam domains (8)
         Sec.struct. author ..eeee....eeeeee...eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----SERPIN     -------------- PROSITE
           Transcript 1 (1) Exon 1.6  PDB: H:359-387      Transcript 1 (1)
           Transcript 1 (2) ----------------------------- Transcript 1 (2)
                 1lq8 H 359 NSQRLVFNRPFLMFIVDNNILFLGKVNRP 387
                                   368       378         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a1lq8A02A:26-189,A:285-338
1b1lq8E02E:26-189,E:285-338
1c1lq8G02G:26-189,G:285-338
1d1lq8C02C:27-189,C:285-338
(-)
Class: Mainly Beta (13760)
2a1lq8G01G:190-284,G:344-355
2b1lq8A01A:190-284,A:344-354
2c1lq8C01C:190-284,C:344-354
2d1lq8E01E:190-284,E:344-354

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Family: Serpin (63)
1aSerpin-1lq8H01H:359-387
1bSerpin-1lq8H02H:359-387
1cSerpin-1lq8H03H:359-387
1dSerpin-1lq8H04H:359-387
1eSerpin-1lq8H05H:359-387
1fSerpin-1lq8H06H:359-387
1gSerpin-1lq8H07H:359-387
1hSerpin-1lq8H08H:359-387

(-) Gene Ontology  (38, 38)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (IPSP_HUMAN | P05154)
molecular function
    GO:0032190    acrosin binding    Interacting selectively and non-covalently with acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities.
    GO:0005539    glycosaminoglycan binding    Interacting selectively and non-covalently with any glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues.
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0030414    peptidase inhibitor activity    Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
    GO:0031210    phosphatidylcholine binding    Interacting selectively and non-covalently with phosphatidylcholine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of choline.
    GO:0002020    protease binding    Interacting selectively and non-covalently with any protease or peptidase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0001972    retinoic acid binding    Interacting selectively and non-covalently with retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid.
    GO:0004867    serine-type endopeptidase inhibitor activity    Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007342    fusion of sperm to egg plasma membrane    The binding and fusion of a sperm, having penetrated the zona pellucida, with the plasma membrane of the oocyte. Binding occurs at the posterior (post-acrosomal) region of the sperm head.
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
    GO:0051346    negative regulation of hydrolase activity    Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds.
    GO:0010466    negative regulation of peptidase activity    Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
    GO:0045861    negative regulation of proteolysis    Any process that stops, prevents, or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.
    GO:0007338    single fertilization    The union of male and female gametes to form a zygote.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0002080    acrosomal membrane    The membrane that surrounds the acrosomal lumen. The acrosome is a special type of lysosome in the head of a spermatozoon that contains acid hydrolases and is concerned with the breakdown of the outer membrane of the ovum during fertilization.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0031091    platelet alpha granule    A secretory organelle found in blood platelets, which is unique in that it exhibits further compartmentalization and acquires its protein content via two distinct mechanisms: (1) biosynthesis predominantly at the megakaryocyte (MK) level (with some vestigial platelet synthesis) (e.g. platelet factor 4) and (2) endocytosis and pinocytosis at both the MK and circulating platelet levels (e.g. fibrinogen (Fg) and IgG).
    GO:0031094    platelet dense tubular network    A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin.
    GO:0036029    protein C inhibitor-KLK3 complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and prostate-specific antigen (KLK3); formation of the complex inhibits the serine protease activity of prostate-specific antigen.
    GO:0036026    protein C inhibitor-PLAT complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and tissue-type plasminogen activator (PLAT); formation of the complex inhibits the serine protease activity of tissue-type plasminogen activator.
    GO:0036027    protein C inhibitor-PLAU complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and urokinase-type plasminogen activator (PLAU); formation of the complex inhibits the serine protease activity of urokinase-type plasminogen activator.
    GO:0036025    protein C inhibitor-TMPRSS11E complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and transmembrane protease serine 11E (TMPRSS11E); formation of the complex inhibits the serine protease activity of transmembrane protease serine 11E.
    GO:0036024    protein C inhibitor-TMPRSS7 complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and transmembrane protease serine 7 (TMPRSS7); formation of the complex inhibits the serine protease activity of transmembrane protease serine 7.
    GO:0097181    protein C inhibitor-coagulation factor V complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor V (F5); formation of the complex inhibits the serine protease activity of coagulation factor V.
    GO:0097183    protein C inhibitor-coagulation factor XI complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor XI (F11); formation of the complex inhibits the serine protease activity of coagulation factor XI.
    GO:0097182    protein C inhibitor-coagulation factor Xa complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor Xa (F10); formation of the complex inhibits the serine protease activity of coagulation factor Xa.
    GO:0036030    protein C inhibitor-plasma kallikrein complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and plasma kallikrein (KLK1B); formation of the complex inhibits the serine protease activity of plasma kallikrein.
    GO:0036028    protein C inhibitor-thrombin complex    A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and thrombin (F2); formation of the complex inhibits the serine protease activity of thrombin.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IPSP_HUMAN | P051541pai 2hi9 2ol2 2pai 3dy0

(-) Related Entries Specified in the PDB File

1ezx CLEAVED ALPHA-1-ANTITRYPSIN