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(-) Description

Title :  THEORETICAL MODEL OF YWTD DOMAIN 7 OF THE CHICKEN LRP1 (LDLR-RELATED) SCAVENGER RECEPTOR
 
Authors :  T. A. Springer
Date :  16 Sep 98  (Deposition) - 13 Jan 99  (Release) - 29 Dec 99  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Lrp1 Scavenger Receptor, Lipoprotein Receptor, Proteinase- Alpha2 Macroglobulin Recept (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Springer
An Extracellular Beta-Propeller Module Predicted In Lipoprotein And Scavenger Receptors, Tyrosine Kinases, Epidermal Growth Factor Precursor, And Extracellular Matrix Components
J. Mol. Biol. V. 283 837 1998
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (LOW-DENSITY LIPOPROTEIN RECEPTOR- RELATED PROTEIN 1)
    Cellular Location: EXTRACELLULAR
    Chains: A
    Fragment: YWTD DOMAIN 7
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Synonym: ALPHA-2-MACROGLOBULIN RECEPTOR

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LPX)

(-) Sites  (0, 0)

(no "Site" information available for 1LPX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LPX)

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Glu A:3025 -Pro A:3026

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LPX)

(-) PROSITE Motifs  (1, 5)

Theoretical Model (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LDLRBPS51120 LDL-receptor class B (LDLRB) repeat profile.LRP1_CHICK294-336
337-380
381-424
573-615
616-661
662-712
713-756
1307-1353
1354-1396
1397-1443
1444-1488
1489-1529
1625-1667
1668-1711
1712-1751
1752-1796
1930-1972
1973-2015
2016-2059
2060-2103
2247-2288
2289-2337
2338-2382
2383-2425
2426-2467
3066-3110
3111-3153
3154-3197
3198-3240
3241-3281
3910-3927
3969-4011
4012-4055
4056-4100		  5-
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A:3066-3110
A:3111-3153
A:3154-3197
A:3198-3240
A:3241-3281
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(-) Exons   (0, 0)

(no "Exon" information available for 1LPX)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with LRP1_CHICK | P98157 from UniProtKB/Swiss-Prot  Length:4543

    Alignment length:260
                                  3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212      3222      3232      3242      3252      3262      3272      3282
          LRP1_CHICK   3023 DEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHINGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVNSGLREPRALVVDVQNGYLYWTDWGDHSLIGKIGMDGTNRSVIVDTKITWPNGLTLDYINSRIYWADAREDYIEFASLDGSNRHTVLSQDIPHIFALTLFEDYIYWTDWETKSINRAHKTTGANKTLLISTLHRPMDIHIYHPYR 3282
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..eeeeee....eeeeeee....eeeeee.....eeeeee.......eeeee...eeeeeee......eeeeee.....eeeeee....eeeeee....eeeeeee.....eeeeee.....eeeeee.....eeeeee.hhheeeeee......eeeeee.....eeeeee....eeeeee....eeeeeee.....eeeeee...eeeeee....eeeeee....eeeeeee.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------LDLRB  PDB: A:3066-3110 UniProt: 3066-3110   LDLRB  PDB: A:3111-3153 UniProt: 3111-3153 LDLRB  PDB: A:3154-3197 UniProt: 3154-3197  LDLRB  PDB: A:3198-3240 UniProt: 3198-3240 LDLRB  PDB: A:3241-3281                  - PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1lpx A 3023 DEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHINGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVNSGLREPRALVVDVQNGYLYWTDWGDHSLIGKIGMDGTNRSVIVDTKITWPNGLTLDYINSRIYWADAREDYIEFASLDGSNRHTVLSQDIPHIFALTLFEDYIYWTDWETKSINRAHKTTGANKTLLISTLHRPMDIHIYHPYR 3282
                                  3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212      3222      3232      3242      3252      3262      3272      3282
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1LPX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1LPX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1LPX)

(-) Gene Ontology  (6, 6)

Theoretical Model(hide GO term definitions)
Chain A   (LRP1_CHICK | P98157)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
cellular component
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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    Glu A:3025 - Pro A:3026   [ RasMol ]  
 

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