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(-) Description

Title :  STRUCTURE OF A HUMAN BENCE-JONES DIMER CRYSTALLIZED IN U.S. SPACE SHUTTLE MISSION STS-95: 100K
 
Authors :  S. S. Terzyan, C. R. Dewitt, P. A. Ramsland, P. C. Bourne, A. B. Edmundson
Date :  16 Apr 02  (Deposition) - 01 Jul 03  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Human Bence-Jones Dimer, Microgravity Crystallization, Induced Fit, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. S. Terzyan, C. R. Dewitt, P. A. Ramsland, P. C. Bourne, A. B. Edmundso
Comparison Of The Three-Dimensional Structures Of A Human Bence-Jones Dimer Crystallized On Earth And Aboard Us Space Shuttle Mission Sts-95
J. Mol. Recog. V. 16 83 2003
PubMed-ID: 12720277  |  Reference-DOI: 10.1002/JMR.610
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - IMMUNOGLOBULIN LAMBDA LIGHT CHAIN
    Chains: A, B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IG A L, IMMUNOGLOBULIN LAMBDA-CHAIN, IG A1 BUR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PCA2Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1LGV)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:90
2A:139 -A:198
3B:22 -B:90
4B:139 -B:198

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:145 -Pro A:146
2Tyr B:145 -Pro B:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LGV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1LGV)

(-) Exons   (0, 0)

(no "Exon" information available for 1LGV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
 aligned with Q6PJG0_HUMAN | Q6PJG0 from UniProtKB/TrEMBL  Length:235

    Alignment length:214
                                                                                                                             118                                                                                                                  
                                                                                                                           117 |                                                                                                                  
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228    
         Q6PJG0_HUMAN    20 QSALTQPASVSGSPGQSITISCTGTSTDVGSHSLVSWYQQHPGKAPKFLIFEGSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYVGSGT-VVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT 232
               SCOP domains d1lgva1 A:1-112 Immunoglobulin light chain lambda variable domain, VL-lambda                                    d1lgva2 A:113-214 Immunoglobulin light chain lambda constant domain, CL-lambda                         SCOP domains
               CATH domains -1lgvA01 A:2-112 Immunoglobulins                                                                                1lgvA02 A:113-213 Immunoglobulins                                                                    - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee......eee...eeeee........eeeee..hhhhhhh..eeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeeehhhhhhh...eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lgv A   1 xTALTQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT 214
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210    
                            |                                                                                                                                                                                                                     
                            1-PCA                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:214
 aligned with Q6PJG0_HUMAN | Q6PJG0 from UniProtKB/TrEMBL  Length:235

    Alignment length:214
                                                                                                                             118                                                                                                                  
                                                                                                                           117 |                                                                                                                  
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228    
         Q6PJG0_HUMAN    20 QSALTQPASVSGSPGQSITISCTGTSTDVGSHSLVSWYQQHPGKAPKFLIFEGSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYVGSGT-VVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT 232
               SCOP domains d1lgvb1 B:1-112 Immunoglobulin light chain lambda variable domain, VL-lambda                                    d1lgvb2 B:113-214 Immunoglobulin light chain lambda constant domain, CL-lambda                         SCOP domains
               CATH domains -1lgvB01 B:2-112 Immunoglobulins                                                                                1lgvB02 B:113-213 Immunoglobulins                                                                    - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.....eeeeee.hhhh......eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeeee....eeee...eeeee........eeeee..hhhhhhh..eeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lgv B   1 xTALTQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT 214
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210    
                            1-PCA
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1LGV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1LGV)

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  Cis Peptide Bonds
    Tyr A:145 - Pro A:146   [ RasMol ]  
    Tyr B:145 - Pro B:146   [ RasMol ]  
 

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  1lgv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6PJG0_HUMAN | Q6PJG0: 1jvk 1lhz

(-) Related Entries Specified in the PDB File

1jvk THREE-DIMENSIONAL STRUCTURE OF AN IMMUNOGLOBULIN LIGHT CHAIN DIMER ACTING AS A LETHAL AMYLOID PRECURSOR
1lhz STRUCTURE OF A HUMAN BENCE-JONES DIMER CRYSTALLIZED IN U.S. SPACE SHUTTLE MISSION STS-95: 293K