Chain A from PDB Type:PROTEIN Length:174
aligned with CAPSD_TAV | P23627 from UniProtKB/Swiss-Prot Length:229
Alignment length:175
53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213
CAPSD_TAV 44 NIASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKVSCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLAAVLIYQHVPTGIQPNNKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSLQRSRC 218
SCOP domains d1laja_ A: Cucumovirus coat protein SCOP domains
CATH domains 1lajA00 A:44-217 Positive standed ss RNA viruses, Chain A CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhh.................ee....ee.........eeeee.............eeeeeeeeeee.......eeeeee........hhhhhhhhhh....-.eee.............eee.....ee.hhhhh.eeeeee.........eeeeeeeeee.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1laj A 44 NIASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKVSCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLA-VLIYQHVPTGIQPNNKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSASTLPV 217
53 63 73 83 93 103 113 123 133 143 | |152 162 172 182 192 202 212
148 |
149
Chain B from PDB Type:PROTEIN Length:182
aligned with CAPSD_TAV | P23627 from UniProtKB/Swiss-Prot Length:229
Alignment length:183
45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215
CAPSD_TAV 36 TQQVNRLANIASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKVSCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLAAVLIYQHVPTGIQPNNKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSLQRSRC 218
SCOP domains d1lajb_ B: Cucumovirus coat protein SCOP domains
CATH domains 1lajB00 B:36-217 Positive standed ss RNA viruses, Chain A CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh..................ee....ee.........eeeee.............eeeeeeeeeee.......eeeeee........hhhhhhhhhh....-.eee.............eee.....ee.hhhhh.eeeeee.........eeeeeeeeee.......... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1laj B 36 TQQVNRLANIASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKVSCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLA-VLIYQHVPTGIQPNNKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSASTLPV 217
45 55 65 75 85 95 105 115 125 135 145 | | 154 164 174 184 194 204 214
148 |
149
Chain C from PDB Type:PROTEIN Length:184
aligned with CAPSD_TAV | P23627 from UniProtKB/Swiss-Prot Length:229
Alignment length:185
43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213
CAPSD_TAV 34 ALTQQVNRLANIASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKVSCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLAAVLIYQHVPTGIQPNNKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSLQRSRC 218
SCOP domains d1lajc_ C: Cucumovirus coat protein SCOP domains
CATH domains 1lajC00 C:34-217 Positive standed ss RNA viruses, Chain A CATH domains
Pfam domains (1) Cucumo_coat-1lajC01 C:34-211 - ------ Pfam domains (1)
Pfam domains (2) Cucumo_coat-1lajC02 C:34-211 - ------ Pfam domains (2)
Pfam domains (3) Cucumo_coat-1lajC03 C:34-211 - ------ Pfam domains (3)
Sec.struct. author ....hhhhhhhhhhhh..................eeeeeeee.........eeeee.............eeeeeeeeeee.......eeeeee........hhhhhhhhhh....-...............eeeee.....ee.hhhhh.eeeeee.........eeeeeeeeee.......... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1laj C 34 ALTQQVNRLANIASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKVSCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLA-VLIYQHVPTGIQPNNKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSASTLPV 217
43 53 63 73 83 93 103 113 123 133 143 | |152 162 172 182 192 202 212
148 |
149
Chain R from PDB Type:RNA Length:3
1laj R 100 AAA 102
Legend: |
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→ Mismatch |
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(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |