1L0S - JenaLib

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Asym. Unit - sites (Jmol Viewer)

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Biological Unit 9 (Jmol Viewer)

Title :   CHORISTONEURA FUMIFERANA (SPRUCE BUDWORM) ANTIFREEZE PROTEIN ISOFORM 337

Authors :   E. K. Leinala, P. L. Davies, Z. Jia

Date :   12 Feb 02 (Deposition) - 19 Jun 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A (1x),B (1x),C (1x),D (1x)
Biol. Unit 6: A (1x),B (1x),C (1x),D (1x)
Biol. Unit 7: C,D  (1x)
Biol. Unit 8: A,B  (1x)
Biol. Unit 9: B (1x),D (1x)

Keywords :   Left-Handed Beta-Helix, Antifreeze Protein, Iodination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. K. Leinala, P. L. Davies, Z. Jia
Crystal Structure Of Beta-Helical Antifreeze Protein Points To A General Ice Binding Model.
Structure V. 10 619 2002
PubMed-ID: 12015145 | Reference-DOI: 10.1016/S0969-2126(02)00745-1
(for further references see the PDB file header)

Molecule 1 - THERMAL HYSTERESIS PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PET-20B
	Mutation	:	YES
	Organism Common	:	SPRUCE BUDWORM
	Organism Scientific	:	CHORISTONEURA FUMIFERANA
	Organism Taxid	:	7141
	Synonym	:	ANTIFREEZE PROTEIN ISOFORM 337

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)
Biological Unit 6 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)
Biological Unit 7 (1x)	:			C	D
Biological Unit 8 (1x)	:	A	B
Biological Unit 9 (1x)	:		B (1x)		D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	CD	2	Ligand/Ion	CADMIUM ION
2	TYI	4	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	1	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	1	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	1	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	1	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	2	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	2	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 7 (1, 2)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	2	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 8 (1, 2)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	2	Mod. Amino Acid	3,5-DIIODOTYROSINE

Biological Unit 9 (1, 1)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	TYI	1	Mod. Amino Acid	3,5-DIIODOTYROSINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:28 , LYS B:29	BINDING SITE FOR RESIDUE CD D 201
2	AC2	SOFTWARE	ASN D:14	BINDING SITE FOR RESIDUE CD D 202

Asymmetric Unit

No.	Residues
1	A:4	-	A:17
2	A:25	-	A:37
3	A:62	-	A:85
4	A:67	-	A:80
5	B:4	-	B:17
6	B:25	-	B:37
7	B:62	-	B:85
8	B:67	-	B:80
9	C:4	-	C:17
10	C:25	-	C:37
11	C:62	-	C:85
12	C:67	-	C:80
13	D:4	-	D:17
14	D:25	-	D:37
15	D:62	-	D:85
16	D:67	-	D:80

Asymmetric Unit

No.	Residues
1	Gly A:59	-	Pro A:60
2	Gly B:59	-	Pro B:60
3	Gly C:59	-	Pro C:60
4	Gly D:59	-	Pro D:60

(no "SAP(SNP)/Variant" information available for 1L0S)

(no "PROSITE Motif" information available for 1L0S)

(no "Exon" information available for 1L0S)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:88
 aligned with Q9GTP0_CHOFU | Q9GTP0 from UniProtKB/TrEMBL  Length:108

    Alignment length:88
                                    30        40        50        60        70        80        90       100        
         Q9GTP0_CHOFU    21 SCTNTNSQLSANSKCEKSTLTNCYVDKSEVYGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN 108
               SCOP domains d1l0sa_ A: Thermal hysteresis protein                                                    SCOP domains
               CATH domains 1l0sA00 A:3-90  [code=2.160.10.20, no name defined]                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..ee....eee.eeee..eeeeeeee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 1l0s A   3 SCTNTNSQLSANSKCEKSTLTNCyVDKSEVFGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN  90
                                    12        22   |    32        42        52        62        72        82        
                                                  26-TYI

Chain B from PDB  Type:PROTEIN  Length:88
 aligned with Q9GTP0_CHOFU | Q9GTP0 from UniProtKB/TrEMBL  Length:108

    Alignment length:88
                                    30        40        50        60        70        80        90       100        
         Q9GTP0_CHOFU    21 SCTNTNSQLSANSKCEKSTLTNCYVDKSEVYGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN 108
               SCOP domains d1l0sb_ B: Thermal hysteresis protein                                                    SCOP domains
               CATH domains 1l0sB00 B:3-90  [code=2.160.10.20, no name defined]                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..ee....eee..eee..eee..eee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 1l0s B   3 SCTNTNSQLSANSKCEKSTLTNCyVDKSEVFGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN  90
                                    12        22   |    32        42        52        62        72        82        
                                                  26-TYI

Chain C from PDB  Type:PROTEIN  Length:88
 aligned with Q9GTP0_CHOFU | Q9GTP0 from UniProtKB/TrEMBL  Length:108

    Alignment length:88
                                    30        40        50        60        70        80        90       100        
         Q9GTP0_CHOFU    21 SCTNTNSQLSANSKCEKSTLTNCYVDKSEVYGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN 108
               SCOP domains d1l0sc_ C: Thermal hysteresis protein                                                    SCOP domains
               CATH domains 1l0sC00 C:3-90  [code=2.160.10.20, no name defined]                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..ee....eee.eeee..eeeeeeee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 1l0s C   3 SCTNTNSQLSANSKCEKSTLTNCyVDKSEVFGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN  90
                                    12        22   |    32        42        52        62        72        82        
                                                  26-TYI

Chain D from PDB  Type:PROTEIN  Length:88
 aligned with Q9GTP0_CHOFU | Q9GTP0 from UniProtKB/TrEMBL  Length:108

    Alignment length:88
                                    30        40        50        60        70        80        90       100        
         Q9GTP0_CHOFU    21 SCTNTNSQLSANSKCEKSTLTNCYVDKSEVYGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN 108
               SCOP domains d1l0sd_ D: Thermal hysteresis protein                                                    SCOP domains
               CATH domains 1l0sD00 D:3-90  [code=2.160.10.20, no name defined]                                      CATH domains
           Pfam domains (1) -------------------------CfAFP-1l0sD01 D:28-90                                           Pfam domains (1)
           Pfam domains (2) -------------------------CfAFP-1l0sD02 D:28-90                                           Pfam domains (2)
           Pfam domains (3) -------------------------CfAFP-1l0sD03 D:28-90                                           Pfam domains (3)
           Pfam domains (4) -------------------------CfAFP-1l0sD04 D:28-90                                           Pfam domains (4)
           Pfam domains (5) -------------------------CfAFP-1l0sD05 D:28-90                                           Pfam domains (5)
           Pfam domains (6) -------------------------CfAFP-1l0sD06 D:28-90                                           Pfam domains (6)
           Pfam domains (7) -------------------------CfAFP-1l0sD07 D:28-90                                           Pfam domains (7)
           Pfam domains (8) -------------------------CfAFP-1l0sD08 D:28-90                                           Pfam domains (8)
         Sec.struct. author ..eee..ee....eee..eee..eee..eee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 1l0s D   3 SCTNTNSQLSANSKCEKSTLTNCyVDKSEVFGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN  90
                                    12        22   |    32        42        52        62        72        82        
                                                  26-TYI

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded left-handed beta-helix (154)

Superfamily: An insect antifreeze protein (5)

Family: An insect antifreeze protein (5)

Protein domain: Thermal hysteresis protein (4)

Spruce budworm (Choristoneura fumiferana), 5-turn isoforms [TaxId: 7141] (3)

1a	d1l0sa_	A:
1b	d1l0sb_	B:
1c	d1l0sc_	C:
1d	d1l0sd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 3 Solenoid (196)

Topology: UDP N-Acetylglucosamine Acyltransferase; domain 1 (90)

Homologous Superfamily: [code=2.160.10.20, no name defined] (5)

Spruce budworm (Choristoneura fumiferana) (5)

1a	1l0sA00	A:3-90
1b	1l0sB00	B:3-90
1c	1l0sC00	C:3-90
1d	1l0sD00	D:3-90

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: CfAFP] (4)

Family: CfAFP (4)

Choristoneura fumiferana (Spruce budworm) (4)

1a	CfAFP-1l0sD01	D:28-90
1b	CfAFP-1l0sD02	D:28-90
1c	CfAFP-1l0sD03	D:28-90
1d	CfAFP-1l0sD04	D:28-90
1e	CfAFP-1l0sD05	D:28-90
1f	CfAFP-1l0sD06	D:28-90
1g	CfAFP-1l0sD07	D:28-90
1h	CfAFP-1l0sD08	D:28-90

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1L0S)

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:59 - Pro A:60	[ RasMol ]
		Gly B:59 - Pro B:60	[ RasMol ]
		Gly C:59 - Pro C:60	[ RasMol ]
		Gly D:59 - Pro D:60	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (2, 2)

SS Bonds (16, 16)

Cis Peptide Bonds (4, 4)

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