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(-) Description

Title :  ACTIVE LACCASE FROM TRAMETES VERSICOLOR COMPLEXED WITH 2,5-XYLIDINE
 
Authors :  T. Bertrand, C. Jolivalt, P. Briozzo, E. Caminade, N. Joly, C. Madzak, C
Date :  04 Feb 02  (Deposition) - 19 Jun 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Blue-Copper, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Bertrand, C. Jolivalt, P. Briozzo, E. Caminade, N. Joly, C. Madzak, C. Mougin
Crystal Structure Of A Four-Copper Laccase Complexed With A Arylamine: Insights Into Substrate Recognition And Correlation With Kinetics.
Biochemistry V. 41 7325 2002
PubMed-ID: 12044164  |  Reference-DOI: 10.1021/BI0201318

(-) Compounds

Molecule 1 - LACCASE
    Chains: A, B, C, D
    EC Number: 1.10.3.2
    Organism Scientific: TRAMETES VERSICOLOR
    Organism Taxid: 5325
    Strain: ATCC 32745
    Synonym: LACCASE B

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 56)

Asymmetric Unit (4, 56)
No.NameCountTypeFull Name
1CU16Ligand/IonCOPPER (II) ION
2NAG27Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PYE9Ligand/IonTETRAHYDROPYRAN
4XYD4Ligand/Ion2,5-DIMETHYLANILINE
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PYE2Ligand/IonTETRAHYDROPYRAN
4XYD1Ligand/Ion2,5-DIMETHYLANILINE
Biological Unit 2 (3, 12)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PYE4Ligand/IonTETRAHYDROPYRAN
4XYD1Ligand/Ion2,5-DIMETHYLANILINE
Biological Unit 3 (2, 8)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PYE-1Ligand/IonTETRAHYDROPYRAN
4XYD1Ligand/Ion2,5-DIMETHYLANILINE
Biological Unit 4 (3, 10)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PYE3Ligand/IonTETRAHYDROPYRAN
4XYD1Ligand/Ion2,5-DIMETHYLANILINE

(-) Sites  (56, 56)

Asymmetric Unit (56, 56)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:153 , ALA A:155 , LEU A:158 , NAG A:506 , PYE A:508BINDING SITE FOR RESIDUE NAG A 505
02AC2SOFTWAREGLN A:23 , ASN A:54 , THR A:56 , MET A:57 , ALA A:155 , LEU A:158 , NAG A:505BINDING SITE FOR RESIDUE NAG A 506
03AC3SOFTWARENAG A:512BINDING SITE FOR RESIDUE NAG A 507
04AC4SOFTWAREASN A:333 , ASN A:336 , PHE A:338 , NAG A:511BINDING SITE FOR RESIDUE NAG A 510
05AC5SOFTWARENAG A:510BINDING SITE FOR RESIDUE NAG A 511
06AC6SOFTWAREASN A:327 , SER A:383 , PRO A:385 , ASN A:436 , NAG A:507 , HOH A:1063BINDING SITE FOR RESIDUE NAG A 512
07AC7SOFTWAREASN A:217BINDING SITE FOR RESIDUE NAG A 513
08AC8SOFTWAREHIS B:153 , VAL B:154 , ALA B:155 , LEU B:158 , NAG B:606 , PYE B:608 , PYE B:615 , PYE B:616 , HOH B:1018BINDING SITE FOR RESIDUE NAG B 605
09AC9SOFTWAREGLN B:23 , ASN B:54 , THR B:56 , MET B:57 , ALA B:155 , NAG B:605 , PYE B:616BINDING SITE FOR RESIDUE NAG B 606
10BC1SOFTWAREASN B:327 , SER B:383 , PRO B:385 , ASN B:436 , HOH B:1721BINDING SITE FOR RESIDUE NAG B 607
11BC2SOFTWARENAG B:610BINDING SITE FOR RESIDUE NAG B 609
12BC3SOFTWAREASN B:333 , ASN B:336 , PHE B:338 , NAG B:609BINDING SITE FOR RESIDUE NAG B 610
13BC4SOFTWAREASN B:217 , ASP B:234 , NAG B:613 , HOH B:1256 , HOH B:1784BINDING SITE FOR RESIDUE NAG B 611
14BC5SOFTWARENAG B:611BINDING SITE FOR RESIDUE NAG B 613
15BC6SOFTWAREARG C:22 , HIS C:153 , NAG C:706 , HOH C:1486BINDING SITE FOR RESIDUE NAG C 705
16BC7SOFTWAREGLN C:23 , ASN C:54 , THR C:56 , MET C:57 , ALA C:155 , NAG C:705 , HOH C:1783BINDING SITE FOR RESIDUE NAG C 706
17BC8SOFTWAREASN C:327 , SER C:383 , PRO C:385 , ASN C:436 , NAG C:708BINDING SITE FOR RESIDUE NAG C 707
18BC9SOFTWARENAG C:707BINDING SITE FOR RESIDUE NAG C 708
19CC1SOFTWARENAG C:710BINDING SITE FOR RESIDUE NAG C 709
20CC2SOFTWAREASN C:333 , ASN C:336 , PHE C:338 , NAG C:709BINDING SITE FOR RESIDUE NAG C 710
21CC3SOFTWAREASN C:217 , HOH C:1744BINDING SITE FOR RESIDUE NAG C 711
22CC4SOFTWAREGLN D:23 , ALA D:155 , NAG D:806 , PYE D:808 , HOH D:1059BINDING SITE FOR RESIDUE NAG D 805
23CC5SOFTWAREGLN D:23 , ASN D:54 , THR D:56 , MET D:57 , ALA D:155 , NAG D:805BINDING SITE FOR RESIDUE NAG D 806
24CC6SOFTWAREASN D:327 , PRO D:385 , ASN D:436 , HOH D:1523 , HOH D:1527BINDING SITE FOR RESIDUE NAG D 807
25CC7SOFTWARENAG D:812BINDING SITE FOR RESIDUE NAG D 811
26CC8SOFTWAREASN D:333 , THR D:335 , ASN D:336 , PHE D:338 , NAG D:811BINDING SITE FOR RESIDUE NAG D 812
27CC9SOFTWAREASN D:217 , VAL D:232BINDING SITE FOR RESIDUE NAG D 813
28DC1SOFTWAREHIS A:395 , CYS A:453 , ILE A:455 , HIS A:458 , PHE A:463BINDING SITE FOR RESIDUE CU A 500
29DC2SOFTWAREHIS A:111 , HIS A:398 , HIS A:400 , HIS A:452 , HOH A:1505BINDING SITE FOR RESIDUE CU A 501
30DC3SOFTWAREHIS A:66 , HIS A:109 , HIS A:454 , HOH A:1505BINDING SITE FOR RESIDUE CU A 502
31DC4SOFTWAREHIS A:64 , HIS A:398 , HIS A:400 , HOH A:1540BINDING SITE FOR RESIDUE CU A 503
32DC5SOFTWAREHIS B:395 , CYS B:453 , ILE B:455 , HIS B:458 , PHE B:463BINDING SITE FOR RESIDUE CU B 500
33DC6SOFTWAREHIS B:111 , HIS B:398 , HIS B:400 , HIS B:452 , HOH B:1502BINDING SITE FOR RESIDUE CU B 501
34DC7SOFTWAREHIS B:66 , HIS B:109 , HIS B:454 , HOH B:1502BINDING SITE FOR RESIDUE CU B 502
35DC8SOFTWAREHIS B:64 , HIS B:66 , HIS B:398 , HIS B:400 , HOH B:1304BINDING SITE FOR RESIDUE CU B 503
36DC9SOFTWAREHIS C:395 , CYS C:453 , ILE C:455 , HIS C:458 , PHE C:463BINDING SITE FOR RESIDUE CU C 500
37EC1SOFTWAREHIS C:111 , HIS C:398 , HIS C:400 , HIS C:452 , HOH C:1492BINDING SITE FOR RESIDUE CU C 501
38EC2SOFTWAREHIS C:64 , HIS C:66 , HIS C:109 , HIS C:454 , HOH C:1492BINDING SITE FOR RESIDUE CU C 502
39EC3SOFTWAREHIS C:64 , HIS C:398 , HIS C:400 , HOH C:1748BINDING SITE FOR RESIDUE CU C 503
40EC4SOFTWAREHIS D:395 , CYS D:453 , ILE D:455 , HIS D:458 , PHE D:463BINDING SITE FOR RESIDUE CU D 500
41EC5SOFTWAREHIS D:111 , HIS D:398 , HIS D:400 , HIS D:452 , HOH D:1503BINDING SITE FOR RESIDUE CU D 501
42EC6SOFTWAREHIS D:66 , HIS D:109 , HIS D:454 , HOH D:1503BINDING SITE FOR RESIDUE CU D 502
43EC7SOFTWAREHIS D:64 , HIS D:66 , HIS D:398 , HIS D:400 , HOH D:1747BINDING SITE FOR RESIDUE CU D 503
44EC8SOFTWARENAG A:505 , PYE A:509BINDING SITE FOR RESIDUE PYE A 508
45EC9SOFTWAREPYE A:508BINDING SITE FOR RESIDUE PYE A 509
46FC1SOFTWAREPHE A:162 , LEU A:164 , ASP A:206 , PHE A:265 , HIS A:458BINDING SITE FOR RESIDUE XYD A 514
47FC2SOFTWARENAG B:605 , PYE B:614 , PYE B:615BINDING SITE FOR RESIDUE PYE B 608
48FC3SOFTWAREPYE B:608 , HOH B:1771BINDING SITE FOR RESIDUE PYE B 614
49FC4SOFTWAREPHE B:20 , NAG B:605 , PYE B:608BINDING SITE FOR RESIDUE PYE B 615
50FC5SOFTWAREGLN B:23 , NAG B:605 , NAG B:606 , HOH B:1018BINDING SITE FOR RESIDUE PYE B 616
51FC6SOFTWAREPHE B:162 , LEU B:164 , ASP B:206 , PHE B:265 , HIS B:458BINDING SITE FOR RESIDUE XYD B 612
52FC7SOFTWAREPHE C:162 , LEU C:164 , ASP C:206 , PHE C:265 , HIS C:458BINDING SITE FOR RESIDUE XYD C 712
53FC8SOFTWARENAG D:805 , PYE D:809 , PYE D:810BINDING SITE FOR RESIDUE PYE D 808
54FC9SOFTWAREPYE D:808BINDING SITE FOR RESIDUE PYE D 809
55GC1SOFTWAREPYE D:808BINDING SITE FOR RESIDUE PYE D 810
56GC2SOFTWAREPHE D:162 , LEU D:164 , ASP D:206 , PHE D:265 , HIS D:458BINDING SITE FOR RESIDUE XYD D 814

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:85 -A:488
2A:117 -A:205
3B:85 -B:488
4B:117 -B:205
5C:85 -C:488
6C:117 -C:205
7D:85 -D:488
8D:117 -D:205

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Leu A:366 -Pro A:367
2Ala A:393 -Pro A:394
3Leu B:366 -Pro B:367
4Ala B:393 -Pro B:394
5Leu C:366 -Pro C:367
6Ala C:393 -Pro C:394
7Leu D:366 -Pro D:367
8Ala D:393 -Pro D:394

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1KYA)

(-) Exons   (0, 0)

(no "Exon" information available for 1KYA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:499
 aligned with Q96UT7_TRAVE | Q96UT7 from UniProtKB/TrEMBL  Length:520

    Alignment length:499
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511         
         Q96UT7_TRAVE    22 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 520
               SCOP domains d1kyaa1 A:1-130 Laccase                                                                                                           d1kyaa2 A:131-300 Laccase                                                                                                                                                 d1kyaa3 A:301-499 Laccase                                                                                                                                                                               SCOP domains
               CATH domains 1kyaA01 A:1-132 Cupredoxins -  blue copper proteins                                                                                 1kyaA02 A:133-309 Cupredoxins -  blue copper proteins                                                                                                                            1kyaA03 A:310-499 Cupredoxins -  blue copper proteins                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee......eeeeee........eeee...eeeeeeee...hhhhh....eeee......hhhhh.............eeeeeeee.....eeeeeee..........eeeeeee.....hhhhh...hhh.eeeeeee................eeee...............eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee...................hhhhh..................eeee..eee....eee..........hhhhhhhh.............eeee....eeeee............eeee....eeeee.............ee.eee...................eeeeeee..........eeeeeehhhhhhhhh..hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kya A   1 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 499
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490         


Chain B from PDB  Type:PROTEIN  Length:499
 aligned with Q96UT7_TRAVE | Q96UT7 from UniProtKB/TrEMBL  Length:520

    Alignment length:499
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511         
         Q96UT7_TRAVE    22 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 520
               SCOP domains d1kyab1 B:1-130 Laccase                                                                                                           d1kyab2 B:131-300 Laccase                                                                                                                                                 d1kyab3 B:301-499 Laccase                                                                                                                                                                               SCOP domains
               CATH domains 1kyaB01 B:1-132 Cupredoxins -  blue copper proteins                                                                                 1kyaB02 B:133-309 Cupredoxins -  blue copper proteins                                                                                                                            1kyaB03 B:310-499 Cupredoxins -  blue copper proteins                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee......eeeeee........eeee...eeeeeeee...hhhhh....eeee......hhhhh.............eeeeeeee.....eeeeeee..........eeeeeee.....hhhhh...hhh.eeeeeee................eeee...............eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee...................hhhhh..................eeee..eee....eee..........hhhhhhhh.............eeee....eeeee............eeee....eeeee.............ee.eee...................eeeeeee..........eeeeeehhhhhhhhh..hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kya B   1 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 499
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490         


Chain C from PDB  Type:PROTEIN  Length:499
 aligned with Q96UT7_TRAVE | Q96UT7 from UniProtKB/TrEMBL  Length:520

    Alignment length:499
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511         
         Q96UT7_TRAVE    22 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 520
               SCOP domains d1kyac1 C:1-130 Laccase                                                                                                           d1kyac2 C:131-300 Laccase                                                                                                                                                 d1kyac3 C:301-499 Laccase                                                                                                                                                                               SCOP domains
               CATH domains 1kyaC01 C:1-132 Cupredoxins -  blue copper proteins                                                                                 1kyaC02 C:133-309 Cupredoxins -  blue copper proteins                                                                                                                            1kyaC03 C:310-499 Cupredoxins -  blue copper proteins                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee......eeeeee........eeee...eeeeeeee...hhhhh....eeee......hhhhh.............eeeeeeee.....eeeeeee..........eeeeeee.....hhhhh...hhh.eeeeeee................eeee...............eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee...................hhhhh..................eeee..eee....eee..........hhhhhhhh.............eeee....eeeee............eeee....eeeee.............ee.eee...................eeeeeee..........eeeeeehhhhhhhhh..hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kya C   1 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 499
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490         


Chain D from PDB  Type:PROTEIN  Length:499
 aligned with Q96UT7_TRAVE | Q96UT7 from UniProtKB/TrEMBL  Length:520

    Alignment length:499
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511         
         Q96UT7_TRAVE    22 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 520
               SCOP domains d1kyad1 D:1-130 Laccase                                                                                                           d1kyad2 D:131-300 Laccase                                                                                                                                                 d1kyad3 D:301-499 Laccase                                                                                                                                                                               SCOP domains
               CATH domains 1kyaD01 D:1-132 Cupredoxins -  blue copper proteins                                                                                 1kyaD02 D:133-309 Cupredoxins -  blue copper proteins                                                                                                                            1kyaD03 D:310-499 Cupredoxins -  blue copper proteins                                                                                                                                          CATH domains
           Pfam domains (1) --------Cu-oxidase_3-1kyaD09 D:9-131                                                                                               ----------Cu-oxidase-1kyaD01 D:142-284                                                                                                                   -----------------------------------------------------------Cu-oxidase_2-1kyaD05 D:344-473                                                                                                    -------------------------- Pfam domains (1)
           Pfam domains (2) --------Cu-oxidase_3-1kyaD10 D:9-131                                                                                               ----------Cu-oxidase-1kyaD02 D:142-284                                                                                                                   -----------------------------------------------------------Cu-oxidase_2-1kyaD06 D:344-473                                                                                                    -------------------------- Pfam domains (2)
           Pfam domains (3) --------Cu-oxidase_3-1kyaD11 D:9-131                                                                                               ----------Cu-oxidase-1kyaD03 D:142-284                                                                                                                   -----------------------------------------------------------Cu-oxidase_2-1kyaD07 D:344-473                                                                                                    -------------------------- Pfam domains (3)
           Pfam domains (4) --------Cu-oxidase_3-1kyaD12 D:9-131                                                                                               ----------Cu-oxidase-1kyaD04 D:142-284                                                                                                                   -----------------------------------------------------------Cu-oxidase_2-1kyaD08 D:344-473                                                                                                    -------------------------- Pfam domains (4)
         Sec.struct. author ....eeeeeeeeeee......eeeeee........eeee...eeeeeeee...hhhhh....eeee......hhhhh.............eeeeeeee.....eeeeeee..........eeeeeee.....hhhhh...hhh.eeeeeee................eeee...............eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee...................hhhhh..................eeee..eee....eee..........hhhhhhhh.............eeee....eeeee............eeee....eeeee.............ee.eee...................eeeeeee..........eeeeeehhhhhhhhh..hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kya D   1 GIGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKLGPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLVATAVPGSPVAGGVDLAINMAFNFNGTNFFINGASFTPPTVPVLLQIISGAQNAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVPQAWSDLCPTYDARDPSDQ 499
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: Cupredoxin-like (545)
(-)
Superfamily: Cupredoxins (543)
(-)
Family: Multidomain cupredoxins (146)
(-)
Protein domain: Laccase (13)
(-)
Trametes versicolor, laccase 1 [TaxId: 5325] (1)
1ad1kyaa1A:1-130
1bd1kyaa2A:131-300
1cd1kyad2D:131-300
1dd1kyad3D:301-499
1ed1kyaa3A:301-499
1fd1kyab1B:1-130
1gd1kyab2B:131-300
1hd1kyab3B:301-499
1id1kyac1C:1-130
1jd1kyac2C:131-300
1kd1kyac3C:301-499
1ld1kyad1D:1-130

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Cupredoxins - blue copper proteins (420)
(-)
Trametes versicolor. Organism_taxid: 5325. Strain: atcc 32745 (1)
1a1kyaA01A:1-132
1b1kyaB01B:1-132
1c1kyaC03C:310-499
1d1kyaD03D:310-499
1e1kyaC01C:1-132
1f1kyaD01D:1-132
1g1kyaA02A:133-309
1h1kyaB02B:133-309
1i1kyaC02C:133-309
1j1kyaD02D:133-309
1k1kyaA03A:310-499
1l1kyaB03B:310-499

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: CU_oxidase (192)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q96UT7_TRAVE | Q96UT7)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0052716    hydroquinone:oxygen oxidoreductase activity    Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1kya
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  1.10.3.2
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 Related Entries

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