1KQP - JenaLib

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:50 , GLU A:162 , ADJ A:3001 , POP A:4001 , HOH A:6037	BINDING SITE FOR RESIDUE MG A 5001
02	AC2	SOFTWARE	THR A:208 , ADJ A:3001 , POP A:4001 , HOH A:6075 , HOH A:6234	BINDING SITE FOR RESIDUE MG A 5002
03	AC3	SOFTWARE	THR B:208 , ADJ B:3002 , POP B:4002 , HOH B:6039 , HOH B:6043	BINDING SITE FOR RESIDUE MG B 5003
04	AC4	SOFTWARE	ASP B:50 , GLU B:162 , ADJ B:3002 , POP B:4002 , HOH B:6019	BINDING SITE FOR RESIDUE MG B 5004
05	AC5	SOFTWARE	ASP B:124 , HOH B:6061 , HOH B:6073 , HOH B:6122 , HOH B:6149 , HOH B:6156	BINDING SITE FOR RESIDUE MG B 5005
06	AC6	SOFTWARE	GLY A:225 , GLU A:230 , LYS A:243 , EDO A:2002 , HOH A:6337 , HOH B:6188	BINDING SITE FOR RESIDUE EDO A 2001
07	AC7	SOFTWARE	GLU A:221 , GLY A:225 , ILE A:226 , GLU A:230 , EDO A:2001 , HOH A:6402 , HOH B:6073 , HOH B:6218	BINDING SITE FOR RESIDUE EDO A 2002
08	AC8	SOFTWARE	HOH A:6402 , GLY B:123 , LYS B:194 , GLU B:195 , HOH B:6137 , HOH B:6471	BINDING SITE FOR RESIDUE EDO B 2003
09	AC9	SOFTWARE	ARG B:56 , PHE B:96 , LYS B:98 , HOH B:6573 , HOH B:6596	BINDING SITE FOR RESIDUE EDO B 2004
10	BC1	SOFTWARE	HOH A:6612 , GLU B:23 , VAL B:26 , ASN B:27 , SER B:64 , EDO B:2006 , HOH B:6233 , HOH B:6489	BINDING SITE FOR RESIDUE EDO B 2005
11	BC2	SOFTWARE	GLN A:91 , LYS B:30 , SER B:64 , GLU B:67 , GLU B:68 , EDO B:2005	BINDING SITE FOR RESIDUE EDO B 2006
12	BC3	SOFTWARE	GLU A:121 , HOH A:6116 , TRP B:103 , LYS B:104	BINDING SITE FOR RESIDUE EDO B 2007
13	BC4	SOFTWARE	PRO A:262 , HOH A:6031 , HOH A:6298 , HOH A:6354 , ASP B:158 , PHE B:168 , GLY B:174	BINDING SITE FOR RESIDUE EDO A 2008
14	BC5	SOFTWARE	LEU A:179 , HOH A:6428 , VAL B:261 , PRO B:262 , SER B:264 , ASP B:267 , HOH B:6325	BINDING SITE FOR RESIDUE EDO B 2009
15	BC6	SOFTWARE	ARG B:56 , GLN B:59 , GLU B:63 , LYS B:98	BINDING SITE FOR RESIDUE EDO B 2010
16	BC7	SOFTWARE	LEU A:43 , GLY A:44 , ILE A:45 , SER A:46 , SER A:51 , ARG A:78 , LEU A:79 , GLN A:84 , PHE A:129 , ASN A:133 , ARG A:137 , ARG A:139 , THR A:157 , GLU A:162 , PHE A:167 , PHE A:168 , THR A:169 , LYS A:170 , ASP A:173 , THR A:208 , ALA A:209 , LEU A:211 , GLU A:223 , HIS A:257 , LYS A:258 , POP A:4001 , MG A:5001 , MG A:5002 , HOH A:6001 , HOH A:6002 , HOH A:6005 , HOH A:6037 , HOH A:6098 , HOH A:6181 , HOH A:6184 , HOH A:6204 , HOH A:6216 , HOH A:6234 , HOH A:6235 , HOH A:6271 , HOH A:6452 , HOH A:6595 , HOH A:6621 , HOH A:6631 , TYR B:32 , THR B:36 , TYR B:144 , LEU B:153 , ASP B:177 , HOH B:6093 , HOH B:6359	BINDING SITE FOR RESIDUE ADJ A 3001
17	BC8	SOFTWARE	TYR A:32 , THR A:36 , TYR A:144 , LEU A:153 , ASP A:177 , HOH A:6135 , LEU B:43 , GLY B:44 , ILE B:45 , SER B:46 , SER B:51 , ARG B:78 , LEU B:79 , GLN B:84 , ASN B:133 , ARG B:137 , ARG B:139 , THR B:157 , GLU B:162 , PHE B:167 , PHE B:168 , THR B:169 , LYS B:170 , ASP B:173 , THR B:208 , ALA B:209 , LEU B:211 , GLU B:223 , HIS B:257 , LYS B:258 , POP B:4002 , MG B:5003 , MG B:5004 , HOH B:6003 , HOH B:6004 , HOH B:6006 , HOH B:6019 , HOH B:6039 , HOH B:6136 , HOH B:6178 , HOH B:6200 , HOH B:6214 , HOH B:6295 , HOH B:6339 , HOH B:6435 , HOH B:6580 , HOH B:6583 , HOH B:6634 , HOH B:6667 , HOH B:6708	BINDING SITE FOR RESIDUE ADJ B 3002
18	BC9	SOFTWARE	SER A:46 , GLY A:48 , GLN A:49 , ASP A:50 , SER A:51 , GLU A:162 , LYS A:186 , PRO A:207 , THR A:208 , ADJ A:3001 , MG A:5001 , MG A:5002 , HOH A:6005 , HOH A:6037 , HOH A:6041 , HOH A:6075 , HOH A:6234	BINDING SITE FOR RESIDUE POP A 4001
19	CC1	SOFTWARE	SER B:46 , GLY B:48 , GLN B:49 , ASP B:50 , SER B:51 , GLU B:162 , LYS B:186 , PRO B:207 , THR B:208 , ADJ B:3002 , MG B:5003 , MG B:5004 , HOH B:6006 , HOH B:6015 , HOH B:6019 , HOH B:6039 , HOH B:6043	BINDING SITE FOR RESIDUE POP B 4002

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:271
 aligned with NADE_BACSU | P08164 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:271
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271 
           NADE_BACSU     2 SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK 272
               SCOP domains d1kqpa_ A: NH3-dependent NAD+-synthetase                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1kqpA00 A:1-271 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeee.......hhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhhhhh....................hhhhhhhhhhhh...hhhhhh.............hhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kqp A   1 SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK 271
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain B from PDB  Type:PROTEIN  Length:271
 aligned with NADE_BACSU | P08164 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:271
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271 
           NADE_BACSU     2 SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK 272
               SCOP domains d1kqpb_ B: NH3-dependent NAD+-synthetase                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1kqpB00 B:1-271 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                                                                                                           CATH domains
           Pfam domains (1) --------------------NAD_synthase-1kqpB01 B:21-262                                                                                                                                                                                                                     --------- Pfam domains (1)
           Pfam domains (2) --------------------NAD_synthase-1kqpB02 B:21-262                                                                                                                                                                                                                     --------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeee.......hhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhhhhh....................hhhhhhhhhhhh..hhhhhh..............hhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kqp B   1 SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK 271
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (NADE_BACSU | P08164)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003952	NAD+ synthase (glutamine-hydrolyzing) activity	Catalysis of the reaction: ATP + deamido-NAD+ + L-glutamine + H2O = AMP + diphosphate + NAD+ + L-glutamate.
	GO:0008795	NAD+ synthase activity	Catalysis of the reaction: ATP + deamido-NAD+ + NH3 = AMP + diphosphate + NAD+.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0009435	NAD biosynthetic process	The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH.
	GO:0030435	sporulation resulting in formation of a cellular spore	The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1kqp)

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Access by PDB/NDB ID
	1kqp
		Family and Domain Information	:	ProDom \| SYSTERS
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	NADE_BACSU \| P08164
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	6.3.5.1
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (19, 19)