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(-) Description

Title :  THE CRYSTAL STRUCTURE ANALYSIS OF CREATINE AMIDINOHYDROLASE FROM ACTINOBACILLUS
 
Authors :  B. Padmanabhan, A. Paehler, M. Horikoshi
Date :  26 Dec 01  (Deposition) - 31 Jul 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha Betal, 3-Layer(Aba) Sandwich, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Padmanabhan, A. Paehler, M. Horikoshi
Structure Of Creatine Amidinohydrolase From Actinobacillus.
Acta Crystallogr. , Sect. D V. 58 1322 2002
PubMed-ID: 12136144  |  Reference-DOI: 10.1107/S0907444902010156
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CREATINE AMIDINOHYDROLASE
    Chains: A, B
    EC Number: 3.5.3.3
    Organism Scientific: ACTINOBACILLUS
    Organism Taxid: 713

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 28)

Asymmetric/Biological Unit (1, 28)
No.NameCountTypeFull Name
1ASX28Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 1KP0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1KP0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1KP0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KP0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1KP0)

(-) Exons   (0, 0)

(no "Exon" information available for 1KP0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
 aligned with Q7SIB5_9PAST | Q7SIB5 from UniProtKB/TrEMBL  Length:402

    Alignment length:402
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400  
         Q7SIB5_9PAST     1 AAMIZTZKYHNGZKKYTPFSZAEMTRRZBRLRAWMAKSBIDAVLFTSYHNINYYSGWLYCYFGRKYAZVIBZVKAVTISKGIDGGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNBMYRZWDLLRYRTFGYGHSFGVLBHYYGREAGVELREDIZTVLEPGMVVSMEPMVMBPEGEPGAGGYREHDILVIKENBTENITGFPFGPEHNIIKA 402
               SCOP domains d1kp0a1 A:1-156 Creatinase                                                                                                                                  d1kp0a2 A:157-402 Creatinase, catalytic (C-terminal) domain                                                                                                                                                                                            SCOP domains
               CATH domains -1kp0A01 A:2-155 Creatine Amidinohydrolase, subunit A, domain 1                                                                                            1kp0A02 A:156-401 Creatinase/methionine aminopeptidase superfamily                                                                                                                                                                                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee............hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhh..........eeee....eeeeee.hhhhhhhhhh..eeeee.....hhhhhhhhhhhh...eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.hhhhh....ee........eeeeeeeeee..ee..eeeeeee...hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh........eeee..ee...................eeee..eeee.......eeee..eeeeee..eeee...........ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1kp0 A   1 AAMIZTZKYHNGZKKYTPFSZAEMTRRZxRLRAWMAKSxIDAVLFTSYHNINYYSGWLYCYFGRKYAZVIxZVKAVTISKGIDGGMPWRRSFGxNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLxHRRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZxLIRZGARISDIGGAATAAAISAGVPEYEVAIATTxAMVRZIARxFPYVELMDTWIWFQSGINTDGAHNPVTxRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVxDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNxMYRZWDLLRYRTFGYGHSFGVLxHYYGREAGVELREDIZTVLEPGMVVSMEPMVMxPEGEPGAGGYREHDILVIKENxTENITGFPFGPEHNIIKA 402
                                    10        20        30        40        50        60        70|       80        90   |   100       110       120       130       140       150       160   |   170       180       190       200       210       220       230     | 240       250       260       270       280       290       300     | 310       320       330       340       350       360 |     370       380   |   390       400  
                                                       29-ASX    39-ASX                          71-ASX                 94-ASX                             130-ASX                           164-ASX                            199-ASX  208-ASX                     236-ASX                           270-ASX                             306-ASX                329-ASX                          362-ASX               384-ASX              


Chain B from PDB  Type:PROTEIN  Length:402
 aligned with Q7SIB5_9PAST | Q7SIB5 from UniProtKB/TrEMBL  Length:402

    Alignment length:402
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400  
         Q7SIB5_9PAST     1 AAMIZTZKYHNGZKKYTPFSZAEMTRRZBRLRAWMAKSBIDAVLFTSYHNINYYSGWLYCYFGRKYAZVIBZVKAVTISKGIDGGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNBMYRZWDLLRYRTFGYGHSFGVLBHYYGREAGVELREDIZTVLEPGMVVSMEPMVMBPEGEPGAGGYREHDILVIKENBTENITGFPFGPEHNIIKA 402
               SCOP domains d1kp0b1 B:1-156 Creatinase                                                                                                                                  d1kp0b2 B:157-402 Creatinase, catalytic (C-terminal) domain                                                                                                                                                                                            SCOP domains
               CATH domains -1kp0B01 B:2-155 Creatine Amidinohydrolase, subunit A, domain 1                                                                                            1kp0B02 B:156-401 Creatinase/methionine aminopeptidase superfamily                                                                                                                                                                                    - CATH domains
           Pfam domains (1) --------------------------Creatinase_N-1kp0B01 B:27-157                                                                                                      ------Peptidase_M24-1kp0B03 B:164-382                                                                                                                                                                                            -------------------- Pfam domains (1)
           Pfam domains (2) --------------------------Creatinase_N-1kp0B02 B:27-157                                                                                                      ------Peptidase_M24-1kp0B04 B:164-382                                                                                                                                                                                            -------------------- Pfam domains (2)
         Sec.struct. author .....ee............hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhh..........eeee....eeeeee.hhhhhhhhhh..eeeee.....hhhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....ee...eeeeee.hhhhh....ee........eeeeeee.ee..ee..eeeeeee...hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh..........ee..ee...................eeee..eeee.......eeee..eeeee....eee...........ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1kp0 B   1 AAMIZTZKYHNGZKKYTPFSZAEMTRRZxRLRAWMAKSxIDAVLFTSYHNINYYSGWLYCYFGRKYAZVIxZVKAVTISKGIDGGMPWRRSFGxNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLxHRRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZxLIRZGARISDIGGAATAAAISAGVPEYEVAIATTxAMVRZIARxFPYVELMDTWIWFQSGINTDGAHNPVTxRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVxDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNxMYRZWDLLRYRTFGYGHSFGVLxHYYGREAGVELREDIZTVLEPGMVVSMEPMVMxPEGEPGAGGYREHDILVIKENxTENITGFPFGPEHNIIKA 402
                                    10        20        30        40        50        60        70|       80        90   |   100       110       120       130       140       150       160   |   170       180       190       200       210       220       230     | 240       250       260       270       280       290       300     | 310       320       330       340       350       360 |     370       380   |   390       400  
                                                       29-ASX    39-ASX                          71-ASX                 94-ASX                             130-ASX                           164-ASX                            199-ASX  208-ASX                     236-ASX                           270-ASX                             306-ASX                329-ASX                          362-ASX               384-ASX
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Clan: AMP_N-like (22)
(-)
Clan: no clan defined [family: Peptidase_M24] (23)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q7SIB5_9PAST | Q7SIB5)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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 Related Entries

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