1KN0 - JenaLib

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0a_ A: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.........hhhhh.....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: A:29-62            Exon 1.6a  PDB: A:63-94         ----------------------Exon 1.7a  PDB: A:117-156               -------------------------Exon 1.9a  PDB: A:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: A:94-11---------------------------------------Exon 1.8  PDB: A:156-181  --------------------------- Transcript 1 (2)
                 1kn0 A  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain B from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0b_ B: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh......eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: B:29-62            Exon 1.6a  PDB: B:63-94         ----------------------Exon 1.7a  PDB: B:117-156               -------------------------Exon 1.9a  PDB: B:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: B:94-11---------------------------------------Exon 1.8  PDB: B:156-181  --------------------------- Transcript 1 (2)
                 1kn0 B  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain C from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0c_ C: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh......eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: C:29-62            Exon 1.6a  PDB: C:63-94         ----------------------Exon 1.7a  PDB: C:117-156               -------------------------Exon 1.9a  PDB: C:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: C:94-11---------------------------------------Exon 1.8  PDB: C:156-181  --------------------------- Transcript 1 (2)
                 1kn0 C  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain D from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0d_ D: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: D:29-62            Exon 1.6a  PDB: D:63-94         ----------------------Exon 1.7a  PDB: D:117-156               -------------------------Exon 1.9a  PDB: D:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: D:94-11---------------------------------------Exon 1.8  PDB: D:156-181  --------------------------- Transcript 1 (2)
                 1kn0 D  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain E from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0e_ E: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: E:29-62            Exon 1.6a  PDB: E:63-94         ----------------------Exon 1.7a  PDB: E:117-156               -------------------------Exon 1.9a  PDB: E:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: E:94-11---------------------------------------Exon 1.8  PDB: E:156-181  --------------------------- Transcript 1 (2)
                 1kn0 E  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain F from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0f_ F: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhh....eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: F:29-62            Exon 1.6a  PDB: F:63-94         ----------------------Exon 1.7a  PDB: F:117-156               -------------------------Exon 1.9a  PDB: F:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: F:94-11---------------------------------------Exon 1.8  PDB: F:156-181  --------------------------- Transcript 1 (2)
                 1kn0 F  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain G from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0g_ G: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: G:29-62            Exon 1.6a  PDB: G:63-94         ----------------------Exon 1.7a  PDB: G:117-156               -------------------------Exon 1.9a  PDB: G:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: G:94-11---------------------------------------Exon 1.8  PDB: G:156-181  --------------------------- Transcript 1 (2)
                 1kn0 G  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain H from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0h_ H: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhh....eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: H:29-62            Exon 1.6a  PDB: H:63-94         ----------------------Exon 1.7a  PDB: H:117-156               -------------------------Exon 1.9a  PDB: H:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: H:94-11---------------------------------------Exon 1.8  PDB: H:156-181  --------------------------- Transcript 1 (2)
                 1kn0 H  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain I from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0i_ I: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: I:29-62            Exon 1.6a  PDB: I:63-94         ----------------------Exon 1.7a  PDB: I:117-156               -------------------------Exon 1.9a  PDB: I:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: I:94-11---------------------------------------Exon 1.8  PDB: I:156-181  --------------------------- Transcript 1 (2)
                 1kn0 I  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain J from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0j_ J: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: J:29-62            Exon 1.6a  PDB: J:63-94         ----------------------Exon 1.7a  PDB: J:117-156               -------------------------Exon 1.9a  PDB: J:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: J:94-11---------------------------------------Exon 1.8  PDB: J:156-181  --------------------------- Transcript 1 (2)
                 1kn0 J  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Chain K from PDB  Type:PROTEIN  Length:184
 aligned with RAD52_HUMAN | P43351 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:184
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
          RAD52_HUMAN    25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
               SCOP domains d1kn0k_ K: The homologous-pairing domain of Rad52 recombinase                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh........eeeee.....eeeeehhhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------W------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.4 Exon 1.5  PDB: K:29-62            Exon 1.6a  PDB: K:63-94         ----------------------Exon 1.7a  PDB: K:117-156               -------------------------Exon 1.9a  PDB: K:182-208   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.6d  PDB: K:94-11---------------------------------------Exon 1.8  PDB: K:156-181  --------------------------- Transcript 1 (2)
                 1kn0 K  25 CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSC 208
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K (RAD52_HUMAN | P43351)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0010792	DNA double-strand break processing involved in repair via single-strand annealing	The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang that results in the repair of a double strand break via single-strand annealing.
	GO:0000730	DNA recombinase assembly	The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) into higher order oligomers on single-stranded DNA.
	GO:0006310	DNA recombination	Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0034599	cellular response to oxidative stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
	GO:0006302	double-strand break repair	The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
	GO:0000724	double-strand break repair via homologous recombination	The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
	GO:0045002	double-strand break repair via single-strand annealing	Repair of a DSB made between two repeated sequences oriented in the same direction occurs primarily by the single strand annealing pathway. The ends of the break are processed by a 5' to 3' exonuclease, exposing complementary single-strand regions of the direct repeats that can anneal, resulting in a deletion of the unique DNA between the direct repeats.
	GO:0016925	protein sumoylation	The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
	GO:2000819	regulation of nucleotide-excision repair	Any process that modulates the frequency, rate or extent of nucleotide-excision repair.
cellular component
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 11)

PROSITE Motifs (0, 0)

Exons (7, 77)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 11)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File