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(-) Description

Authors :  T. J. Stillman, A. M. B. Migueis, X. G. Wang, P. J. Baker, K. L. Britton, P. D. W. Rice
Date :  05 Jun 98  (Deposition) - 27 Jan 99  (Release) - 13 Jul 11  (Revision)
Resolution :  2.05
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  T. J. Stillman, A. M. Migueis, X. G. Wang, P. J. Baker, K. L. Britton, P. C. Engel, D. W. Rice
Insights Into The Mechanism Of Domain Closure And Substrate Specificity Of Glutamate Dehydrogenase From Clostridium Symbiosum.
J. Mol. Biol. V. 285 875 1999
PubMed-ID: 9878450  |  Reference-DOI: 10.1006/JMBI.1998.2335
(for further references see the PDB file header)

(-) Compounds

    EC Number1.4.1.2
    Expression SystemESCHERICHIA COLI
    Expression System GeneGDH
    Expression System PlasmidPTAC85-PTAC44
    Expression System StrainQ100
    Expression System Taxid562
    Expression System VectorM13MP19
    Expression System Vector TypeBACTERIOPHAGE
    Organism ScientificCLOSTRIDIUM SYMBIOSUM
    Organism Taxid1512

 Structural Features

(-) Chains, Units

Asymmetric Unit A
Biological Unit 1 (6x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1K89)

(-) Sites  (0, 0)

(no "Site" information available for 1K89)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1K89)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1K89)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1K89)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
1GLFV_DEHYDROGENASEPS00074 Glu / Leu / Phe / Val dehydrogenases active site.DHE2_CLOSY120-133  1A:119-132
Biological Unit 1 (1, 6)
1GLFV_DEHYDROGENASEPS00074 Glu / Leu / Phe / Val dehydrogenases active site.DHE2_CLOSY120-133  6A:119-132

(-) Exons   (0, 0)

(no "Exon" information available for 1K89)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:449
 aligned with DHE2_CLOSY | P24295 from UniProtKB/Swiss-Prot  Length:450

    Alignment length:449
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
               SCOP domains d1k89a2 A:1-194 Glutamate dehydrogenase                                                                                                                                                           d1k89a1 A:195-449 Glutamate dehydrogenase                                                                                                                                                                                                                       SCOP domains
               CATH domains 1k89A03 A:1-51,A:425-449                           1k89A02 A:52-187 Leucine Dehydrogenase, chain A, domain 1                                                                               -------------------1k89A01 A:207-373 NAD(P)-binding Rossmann-like Domain                                                                                                                  ---------------------------------------------------1k89A03 A:1-51,A:425-449  CATH domains
               Pfam domains -----------------------------------------------------ELFV_dehydrog_N-1k89A02 A:54-184                                                                                                   ---------------ELFV_dehydrog-1k89A01 A:200-446                                                                                                                                                                                                                        --- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhh....eeeeeeeeee.....eeeeeeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhh.....eeee......hhhhhhhhhhhhhhh....hhh.....hhh........hhhhhhhhhhhhhhhhh........eee....hhhhhhhhhhhhh.....eeee..eeee.......hhhhhhhhhhhhh....hhhhhhhh..eeee...hhh....eee.........hhhhhhhhh....eee........hhhhhhhhh....eee.hhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (3, 3)

Asymmetric Unit
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric Unit

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (DHE2_CLOSY | P24295)
molecular function
    GO:0004352    glutamate dehydrogenase (NAD+) activity    Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016639    oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0019552    glutamate catabolic process via 2-hydroxyglutarate    The anaerobic chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-hydroxyglutarate, yielding energy in the form of ATP.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        DHE2_CLOSY | P242951aup 1bgv 1hrd 2yfh

(-) Related Entries Specified in the PDB File

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