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(-) Description

Title :  SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE III DOMAIN FROM BACILLUS CIRCULANS WL-12 CHITINASE A1.
 
Authors :  J. G. Jee, T. Ikegami, M. Hashimoto, T. Kawabata, M. Ikeguchi, T. Watanabe, M. Shirakawa
Date :  23 Oct 01  (Deposition) - 18 Dec 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Fibronectin Type Iii Domain, Chitinase, Chitin Binding Domain, Carbohydrase, Horizontal Gene Transfer, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. G. Jee, T. Ikegami, M. Hashimoto, T. Kawabata, M. Ikeguchi, T. Watanabe, M. Shirakawa
Solution Structure Of The Fibronectin Type Iii Domain From Bacillus Circulans Wl-12 Chitinase A1
J. Biol. Chem. V. 277 1388 2002
PubMed-ID: 11600504  |  Reference-DOI: 10.1074/JBC.M109726200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CHITINASE A1
    ChainsA
    EC Number3.2.1.14
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentFIBRONECTIN TYPE-III
    Organism ScientificBACILLUS CIRCULANS
    Organism Taxid1397

 Structural Features

(-) Chains, Units

  
NMR Structure (30x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1K85)

(-) Sites  (0, 0)

(no "Site" information available for 1K85)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1K85)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1K85)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1K85)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FN3PS50853 Fibronectin type-III domain profile.CHIA1_BACCI467-553
562-647
  1-
A:562-644

(-) Exons   (0, 0)

(no "Exon" information available for 1K85)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:88
 aligned with CHIA1_BACCI | P20533 from UniProtKB/Swiss-Prot  Length:699

    Alignment length:88
                                   566       576       586       596       606       616       626       636        
          CHIA1_BACCI   557 TQAPTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDVYNGTALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 644
               SCOP domains d1k85a_ A: Fibronectin type III domain from chitinase A1.                                SCOP domains
               CATH domains 1k85A00 A:557-644 Immunoglobulins                                                        CATH domains
               Pfam domains ----fn3-1k85A01 A:561-637                                                        ------- Pfam domains
         Sec.struct. author .......eeeeeeee....eeeeee.......eeeeeeee...eeeee...eeee.......eeeeeeeeee...........eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FN3  PDB: A:562-644 UniProt: 562-647                                                PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 1k85 A 557 HMAPTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDVYNGTALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 644
                                   566       576       586       596       606       616       626       636        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: E-set (290)
(-)
Family: fn3 (66)

(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)
Chain A   (CHIA1_BACCI | P20533)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0004568    chitinase activity    Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006032    chitin catabolic process    The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CHIA1_BACCI | P205331ed7 1itx

(-) Related Entries Specified in the PDB File

5178 5178 CONTAINS CHEMICAL SHIFT LISTS