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(-) Description

Title :  CRYSTAL STRUCTURE OF SHRIMP ALKALINE PHOSPHATASE
 
Authors :  M. E. De Backer, S. Mc Sweeney, H. B. Rasmussen, B. W. Riise, P. Lindley
Date :  19 Oct 01  (Deposition) - 31 Jul 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Hydrolase, Transferase, Phosphomonoester, Extended Beta Sheet, Zinc Triad, Metal Triad (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. De Backer, S. Mc Sweeney, H. B. Rasmussen, B. W. Riise, P. Lindley, E. Hough
The 1. 9 A Crystal Structure Of Heat-Labile Shrimp Alkaline Phosphatase
J. Mol. Biol. V. 318 1265 2002
PubMed-ID: 12083516  |  Reference-DOI: 10.1016/S0022-2836(02)00035-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALKALINE PHOSPHATASE
    Chains: A, B
    EC Number: 3.1.3.1
    Organism Common: NORTHERN SHRIMP
    Organism Scientific: PANDALUS BOREALIS
    Organism Taxid: 6703

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric Unit (4, 17)
No.NameCountTypeFull Name
1MAE3Ligand/IonMALEIC ACID
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO46Ligand/IonSULFATE ION
4ZN6Ligand/IonZINC ION
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1MAE1Ligand/IonMALEIC ACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO43Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1MAE2Ligand/IonMALEIC ACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO43Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:114 , HOH A:962BINDING SITE FOR RESIDUE NAG A 480
02AC2SOFTWAREASN B:114 , SER B:116 , HOH B:960 , HOH B:977BINDING SITE FOR RESIDUE NAG B 480
03AC3SOFTWAREASP A:315 , HIS A:319 , HIS A:432BINDING SITE FOR RESIDUE ZN A 477
04AC4SOFTWAREASP A:37 , SER A:86 , ASP A:356 , HIS A:357BINDING SITE FOR RESIDUE ZN A 478
05AC5SOFTWAREASP A:37 , HIS A:149 , THR A:151 , GLU A:310 , HOH A:762BINDING SITE FOR RESIDUE ZN A 479
06AC6SOFTWAREASP B:315 , HIS B:319 , HIS B:432BINDING SITE FOR RESIDUE ZN B 477
07AC7SOFTWAREASP B:37 , SER B:86 , ASP B:356 , HIS B:357BINDING SITE FOR RESIDUE ZN B 478
08AC8SOFTWAREASP B:37 , HIS B:149 , THR B:151 , GLU B:310 , HOH B:761BINDING SITE FOR RESIDUE ZN B 479
09AC9SOFTWAREARG A:146 , ARG A:205 , HOH A:1005BINDING SITE FOR RESIDUE SO4 A 481
10BC1SOFTWAREHIS A:399 , THR A:401 , GLU A:402 , TYR A:407BINDING SITE FOR RESIDUE SO4 A 482
11BC2SOFTWAREASP A:274 , ARG A:313 , HOH A:666BINDING SITE FOR RESIDUE SO4 A 483
12BC3SOFTWAREARG B:146 , ARG B:205 , HOH B:861 , HOH B:1028BINDING SITE FOR RESIDUE SO4 B 484
13BC4SOFTWAREHIS B:399 , THR B:401 , GLU B:402 , HOH B:934BINDING SITE FOR RESIDUE SO4 B 485
14BC5SOFTWAREASP B:274 , ARG B:313 , HOH B:561 , HOH B:856BINDING SITE FOR RESIDUE SO4 B 486
15BC6SOFTWAREARG A:204 , ASP A:214 , ILE A:215 , ILE A:230 , TYR A:246 , HOH A:543 , HOH A:1018 , LEU B:213BINDING SITE FOR RESIDUE MAE A 487
16BC7SOFTWARELEU A:213 , ARG B:204 , PHE B:208 , LEU B:213 , ASP B:214 , ILE B:215 , TYR B:246BINDING SITE FOR RESIDUE MAE B 488
17BC8SOFTWARELEU A:23 , PHE A:70 , HIS A:447 , THR A:450 , HOH A:715 , LEU B:23 , PHE B:70BINDING SITE FOR RESIDUE MAE A 489

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:115 -A:180
2A:467 -A:475
3B:115 -B:180
4B:467 -B:475

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Glu A:191 -Pro A:192
2Gly A:365 -Tyr A:366
3Glu B:191 -Pro B:192
4Gly B:365 -Tyr B:366

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1K7H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1K7H)

(-) Exons   (0, 0)

(no "Exon" information available for 1K7H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:476
 aligned with Q9BHT8_PANBO | Q9BHT8 from UniProtKB/TrEMBL  Length:475

    Alignment length:476
                               1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467      
         Q9BHT8_PANBO     - ---KAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIRNTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSVTHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD 473
               SCOP domains d1k7ha_ A: Alkaline phosphatase                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1k7hA00 A:1-476 Alkaline Phosphatase, subunit A                                                                                                                                                                                                                                                                                                                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeee.........hhhhhhhhhhhh.................hhhhhhhhhhh..hhhhhhhhh..eeeeeeeee..hhhhhh...........hhhhhhhh........hhhhhhhhh.hhhhh.eeeeehhhhhh...................hhhhhhhhhhhhh...eeee.hhhhhhh.......eeeee..................hhhhhhhhhhhhhh.....eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......eeeeeee..ee.eee............eeee......eee.eee.................hhhhhhh...............ee...eeeeee..hhhhh..eee.hhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k7h A   1 EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD 476
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470      


Chain B from PDB  Type:PROTEIN  Length:476
 aligned with Q9BHT8_PANBO | Q9BHT8 from UniProtKB/TrEMBL  Length:475

    Alignment length:476
                               1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467      
         Q9BHT8_PANBO     - ---KAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIRNTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSVTHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD 473
               SCOP domains d1k7hb_ B: Alkaline phosphatase                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1k7hB00 B:1-476 Alkaline Phosphatase, subunit A                                                                                                                                                                                                                                                                                                                                                                                                                                              CATH domains
           Pfam domains (1) ---------------------------Alk_phosphatase-1k7hB01 B:28-468                                                                                                                                                                                                                                                                                                                                                                                                                         -------- Pfam domains (1)
           Pfam domains (2) ---------------------------Alk_phosphatase-1k7hB02 B:28-468                                                                                                                                                                                                                                                                                                                                                                                                                         -------- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeee.........hhhhhhhhhhhh..................hhhhhhhhhh..hhhhhhhhh..eeeeeeeee..hhhhhh...........hhhhhhhh........hhhhhhhhh.hhhhh.eeeeehhhhh....................hhhhhhhhhhhhh...eeee.hhhhhhhh......eeeee..................hhhhhhhhhhhhhh.....eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..ee.eee............eeee......eee.eee.................hhhhhhh...............ee...eeeeee..hhhhh..eee.hhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k7h B   1 EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD 476
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Alk_phosphatase (47)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9BHT8_PANBO | Q9BHT8)
molecular function
    GO:0004035    alkaline phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  1k7h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9BHT8_PANBO | Q9BHT8: 1shn 1shq

(-) Related Entries Specified in the PDB File

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