1K7C - JenaLib

Title :   RHAMNOGALACTURONAN ACETYLESTERASE WITH SEVEN N-LINKED CARBOHYDRATE RESIDUES DISTRIBUTED AT TWO N-GLYCOSYLATION SITES REFINED AT 1.12 A RESOLUTION

Authors :   A. Molgaard, S. Larsen

Date :   19 Oct 01 (Deposition) - 28 Dec 01 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.12

Chains :   Asym./Biol. Unit : A

Keywords :   N-Linked Glycosylation, Sgnh-Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Molgaard, S. Larsen
A Branched N-Linked Glycan At Atomic Resolution In The 1. 12 A Structure Of Rhamnogalacturonan Acetylesterase.
Acta Crystallogr. , Sect. D V. 58 111 2002
PubMed-ID: 11752785 | Reference-DOI: 10.1107/S0907444901018479
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:89 , GLY A:142 , ASN A:182 , NAG A:235 , HOH A:1072 , HOH A:1156 , HOH A:1169 , HOH A:1200 , HOH A:1202	BINDING SITE FOR RESIDUE NAG A 234
02	AC2	SOFTWARE	NAG A:234 , MAN A:236 , MAN A:237 , MAN A:239 , HOH A:1202 , HOH A:1229 , HOH A:1284	BINDING SITE FOR RESIDUE NAG A 235
03	AC3	SOFTWARE	VAL A:213 , CYS A:214 , THR A:215 , GLY A:216 , LYS A:220 , NAG A:235 , MAN A:237 , HOH A:1230 , HOH A:1267	BINDING SITE FOR RESIDUE MAN A 236
04	AC4	SOFTWARE	VAL A:213 , CYS A:232 , NAG A:235 , MAN A:236 , MAN A:238 , MAN A:239 , HOH A:1074 , HOH A:1183 , HOH A:1213 , HOH A:1272	BINDING SITE FOR RESIDUE MAN A 237
05	AC5	SOFTWARE	GLU A:55 , LYS A:210 , VAL A:213 , THR A:226 , GLY A:230 , CYS A:232 , MAN A:237 , HOH A:1051 , HOH A:1160 , HOH A:1164 , HOH A:1183	BINDING SITE FOR RESIDUE MAN A 238
06	AC6	SOFTWARE	THR A:91 , GLU A:94 , NAG A:235 , MAN A:237 , HOH A:1260	BINDING SITE FOR RESIDUE MAN A 239
07	AC7	SOFTWARE	ASN A:104 , GLU A:160 , HOH A:1063 , HOH A:1173 , HOH A:1329	BINDING SITE FOR RESIDUE NAG A 302
08	AC8	SOFTWARE	SER A:9 , GLY A:42 , ASN A:74 , ARG A:85 , HIS A:195 , HOH A:1050 , HOH A:1228 , HOH A:1321	BINDING SITE FOR RESIDUE SO4 A 303
09	AC9	SOFTWARE	THR A:149 , ARG A:150 , SO4 A:305 , HOH A:1193 , HOH A:1292 , HOH A:1311	BINDING SITE FOR RESIDUE SO4 A 304
10	BC1	SOFTWARE	GLY A:76 , GLY A:77 , ARG A:150 , SO4 A:304	BINDING SITE FOR RESIDUE SO4 A 305
11	BC2	SOFTWARE	ASN A:136 , HIS A:193 , HOH A:1096 , HOH A:1189 , HOH A:1231	BINDING SITE FOR RESIDUE SO4 A 306

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:233
 aligned with RHA1_ASPAC | Q00017 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:233
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247   
           RHA1_ASPAC    18 TTVYLAGDSTMAKNGGGSGTNGWGEYLASYLSATVVNDAVAGRSARSYTREGRFENIADVVTAGDYVIVEFGHNDGGSLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYVDHWSYVDSIYETLGNATVNSYFPIDHTHTSPAGAEVVAEAFLKAVVCTGTSLKSVLTTTSFEGTCL 250
               SCOP domains d1k7ca_ A: Rhamnogalacturonan acetylesterase                                                                                                                                                                                              SCOP domains
               CATH domains 1k7cA00 A:1-233  [code=3.40.50.1110, no name defined]                                                                                                                                                                                     CATH domains
               Pfam domains --Lipase_GDSL-1k7cA01 A:3-208                                                                                                                                                                                   ------------------------- Pfam domains
         Sec.struct. author .eeeee...............hhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhhh....eeee........hhhhh............eeeeee..eeeeeehhhhhhhhhhhhhhhh..eeeee.................hhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k7c A   1 TTVYLAGDSTMAKNGGGSGTNGWGEYLASYLSATVVNDAVAGRSARSYTREGRFENIADVVTAGDYVIVEFGHNDGGSLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYVDHWSYVDSIYETLGNATVNSYFPIDHTHTSPAGAEVVAEAFLKAVVCTGTSLKSVLTTTSFEGTCL 233
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (1, 1)

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