1K0W - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF L-RIBULOSE-5-PHOSPHATE 4-EPIMERASE

Authors :   Y. Luo, J. Samuel, S. C. Mosimann, J. E. Lee, N. C. J. Strynadka

Date :   21 Sep 01 (Deposition) - 28 Jan 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (4x)
Biol. Unit 2: B  (4x)
Biol. Unit 3: C  (4x)
Biol. Unit 4: D  (4x)
Biol. Unit 5: E  (4x)
Biol. Unit 6: F  (4x)

Keywords :   Epimerase, Ribulose, Aldolase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Luo, J. Samuel, S. C. Mosimann, J. E. Lee, M. E. Tanner, N. C. J. Strynadka
The Structure Of L-Ribulose-5-Phosphate 4-Epimerase: An Aldolase-Like Platform For Epimerization
Biochemistry V. 40 14763 2001
PubMed-ID: 11732895 | Reference-DOI: 10.1021/BI0112513

Molecule 1 - L-RIBULOSE 5 PHOSPHATE 4-EPIMERASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	5.1.3.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRE1
	Expression System Strain	:	Y1090
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ARAD
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (4x)	:	A
Biological Unit 2 (4x)	:		B
Biological Unit 3 (4x)	:			C
Biological Unit 4 (4x)	:				D
Biological Unit 5 (4x)	:					E
Biological Unit 6 (4x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	ZN	6	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:95 , HIS A:97 , HIS A:171	BINDING SITE FOR RESIDUE ZN A 301
2	AC2	SOFTWARE	HIS B:95 , HIS B:97 , HIS B:171 , HOH B:388 , HOH B:403	BINDING SITE FOR RESIDUE ZN B 302
3	AC3	SOFTWARE	HIS C:95 , HIS C:97 , HIS C:171 , HOH C:389	BINDING SITE FOR RESIDUE ZN C 303
4	AC4	SOFTWARE	HIS D:95 , HIS D:97 , HIS D:171 , HOH D:371	BINDING SITE FOR RESIDUE ZN D 304
5	AC5	SOFTWARE	HIS E:95 , HIS E:97 , HIS E:171	BINDING SITE FOR RESIDUE ZN E 305
6	AC6	SOFTWARE	HIS F:95 , HIS F:97 , HIS F:171	BINDING SITE FOR RESIDUE ZN F 306

(no "SS Bond" information available for 1K0W)

(no "Cis Peptide Bond" information available for 1K0W)

Asymmetric Unit (3, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ARAD_ECOLI_001 *	V	50	I	ARAD_ECOLI	---	---	A/B/C/D/E/F	I	50	I
2	UniProt	VAR_ARAD_ECOLI_002 *	T	70	A	ARAD_ECOLI	---	---	A/B/C/D/E/F	A	70	A
3	UniProt	VAR_ARAD_ECOLI_003 *	D	216	N	ARAD_ECOLI	---	---	A/B/C/D/E/F	N	216	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ARAD_ECOLI_001 *	V	50	I	ARAD_ECOLI	---	---	A	I	50	I
2	UniProt	VAR_ARAD_ECOLI_002 *	T	70	A	ARAD_ECOLI	---	---	A	A	70	A
3	UniProt	VAR_ARAD_ECOLI_003 *	D	216	N	ARAD_ECOLI	---	---	A	N	216	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ARAD_ECOLI_001 *	V	50	I	ARAD_ECOLI	---	---	B	I	50	I
2	UniProt	VAR_ARAD_ECOLI_002 *	T	70	A	ARAD_ECOLI	---	---	B	A	70	A
3	UniProt	VAR_ARAD_ECOLI_003 *	D	216	N	ARAD_ECOLI	---	---	B	N	216	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ARAD_ECOLI_001 *	V	50	I	ARAD_ECOLI	---	---	C	I	50	I
2	UniProt	VAR_ARAD_ECOLI_002 *	T	70	A	ARAD_ECOLI	---	---	C	A	70	A
3	UniProt	VAR_ARAD_ECOLI_003 *	D	216	N	ARAD_ECOLI	---	---	C	N	216	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ARAD_ECOLI_001 *	V	50	I	ARAD_ECOLI	---	---	D	I	50	I
2	UniProt	VAR_ARAD_ECOLI_002 *	T	70	A	ARAD_ECOLI	---	---	D	A	70	A
3	UniProt	VAR_ARAD_ECOLI_003 *	D	216	N	ARAD_ECOLI	---	---	D	N	216	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ARAD_ECOLI_001 *	V	50	I	ARAD_ECOLI	---	---	E	I	50	I
2	UniProt	VAR_ARAD_ECOLI_002 *	T	70	A	ARAD_ECOLI	---	---	E	A	70	A
3	UniProt	VAR_ARAD_ECOLI_003 *	D	216	N	ARAD_ECOLI	---	---	E	N	216	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ARAD_ECOLI_001 *	V	50	I	ARAD_ECOLI	---	---	F	I	50	I
2	UniProt	VAR_ARAD_ECOLI_002 *	T	70	A	ARAD_ECOLI	---	---	F	A	70	A
3	UniProt	VAR_ARAD_ECOLI_003 *	D	216	N	ARAD_ECOLI	---	---	F	N	216	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1K0W)

(no "Exon" information available for 1K0W)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:223
 aligned with ARAD_ECOLI | P08203 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
           ARAD_ECOLI     1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKH 223
               SCOP domains d1k0wa_ A: L-ribulose-5-phosphate 4-epimerase                                                                                                                                                                                   SCOP domains
               CATH domains 1k0wA00 A:1-223 L-fuculose-1-phosphate Aldolase                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh........eeeeee....eeee..........hhhhheeee.....eee.......hhhhhhhhhhhh....eeee..hhhhhhhhhhh......hhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh........eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------N------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k0w A   1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHANYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKH 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain B from PDB  Type:PROTEIN  Length:223
 aligned with ARAD_ECOLI | P08203 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
           ARAD_ECOLI     1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKH 223
               SCOP domains d1k0wb_ B: L-ribulose-5-phosphate 4-epimerase                                                                                                                                                                                   SCOP domains
               CATH domains 1k0wB00 B:1-223 L-fuculose-1-phosphate Aldolase                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh........eeeeee....eeee..........hhhhheeee.....eee.......hhhhhhhhhhhh....eeee..hhhhhhhhhhh......hhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh.......eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------N------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k0w B   1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHANYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKH 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain C from PDB  Type:PROTEIN  Length:223
 aligned with ARAD_ECOLI | P08203 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
           ARAD_ECOLI     1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKH 223
               SCOP domains d1k0wc_ C: L-ribulose-5-phosphate 4-epimerase                                                                                                                                                                                   SCOP domains
               CATH domains 1k0wC00 C:1-223 L-fuculose-1-phosphate Aldolase                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh........eeeeee....eeee..........hhhhheeee.....eee.......hhhhhhhhhhhh....eeee..hhhhhhhhhhh......hhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh........eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------N------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k0w C   1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHANYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKH 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain D from PDB  Type:PROTEIN  Length:223
 aligned with ARAD_ECOLI | P08203 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
           ARAD_ECOLI     1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKH 223
               SCOP domains d1k0wd_ D: L-ribulose-5-phosphate 4-epimerase                                                                                                                                                                                   SCOP domains
               CATH domains 1k0wD00 D:1-223 L-fuculose-1-phosphate Aldolase                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh........eeeeee....eeee..........hhhhheeee.....eee.......hhhhhhhhhhhh....eeee..hhhhhhhhhhh......hhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh.......eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------N------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k0w D   1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHANYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKH 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain E from PDB  Type:PROTEIN  Length:223
 aligned with ARAD_ECOLI | P08203 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
           ARAD_ECOLI     1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKH 223
               SCOP domains d1k0we_ E: L-ribulose-5-phosphate 4-epimerase                                                                                                                                                                                   SCOP domains
               CATH domains 1k0wE00 E:1-223 L-fuculose-1-phosphate Aldolase                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh........eeeeee....eeee..........hhhhheeee.....eee.......hhhhhhhhhhhh....eeee..hhhhhhhhhhh......hhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.........eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------N------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k0w E   1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHANYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKH 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain F from PDB  Type:PROTEIN  Length:223
 aligned with ARAD_ECOLI | P08203 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
           ARAD_ECOLI     1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKH 223
               SCOP domains d1k0wf_ F: L-ribulose-5-phosphate 4-epimerase                                                                                                                                                                                   SCOP domains
               CATH domains 1k0wF00 F:1-223 L-fuculose-1-phosphate Aldolase                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh........eeeeee....eeee..........hhhhheeee.....eee.......hhhhhhhhhhhh....eeee..hhhhhhhhhhh......hhhhhh............hhhhhh.hhhhhhhhhhhhhhhhh........eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------N------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1k0w F   1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHANYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKH 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: AraD/HMP-PK domain-like (40)

Superfamily: AraD/HMP-PK domain-like (40)

Family: AraD-like aldolase/epimerase (35)

Protein domain: L-ribulose-5-phosphate 4-epimerase (2)

Escherichia coli [TaxId: 562] (2)

1a	d1k0wa_	A:
1b	d1k0wb_	B:
1c	d1k0wc_	C:
1d	d1k0wd_	D:
1e	d1k0we_	E:
1f	d1k0wf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: L-fuculose-1-phosphate Aldolase (38)

Homologous Superfamily: L-fuculose-1-phosphate Aldolase (38)

Escherichia coli. Organism_taxid: 562. (1)

1a	1k0wA00	A:1-223
1b	1k0wB00	B:1-223
1c	1k0wC00	C:1-223
1d	1k0wD00	D:1-223
1e	1k0wE00	E:1-223
1f	1k0wF00	F:1-223

(no "Pfam Domain" information available for 1K0W)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (ARAD_ECOLI | P08203)

molecular function
	GO:0008742	L-ribulose-phosphate 4-epimerase activity	Catalysis of the reaction: L-ribulose 5-phosphate = D-xylulose 5-phosphate.
	GO:0016832	aldehyde-lyase activity	Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0019572	L-arabinose catabolic process	The chemical reactions and pathways resulting in the breakdown of L-arabinose, the L-enantiomer of arabino-pentose.
	GO:0019569	L-arabinose catabolic process to xylulose 5-phosphate	The chemical reactions and pathways resulting in the breakdown of L-arabinose into other compounds, including xylulose 5-phosphate.
	GO:0019324	L-lyxose metabolic process	The chemical reactions and pathways involving L-lyxose, the L-enantiomer of aldopentose lyxo-pentose, the C-2 epimer of xylose.
	GO:0019568	arabinose catabolic process	The chemical reactions and pathways resulting in the breakdown of arabinose, arabino-pentose.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
	Complete Structure
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	ARAD_ECOLI \| P08203	:	1jdi

1jdi	CRYSTAL STRUCTURE OF L-RIBULOSE-5-PHOSPHATE 4-EPIMERASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (3, 18)

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Exons (0, 0)

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SCOP Domains (1, 6)

CATH Domains (1, 6)

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Gene Ontology (11, 11)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File