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(-) Description

Title :  B4DIMER: A DE NOVO DESIGNED EIGHT-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND
 
Authors :  J. Venkatraman, G. A. Nagana Gowda, P. Balaram
Date :  11 Sep 01  (Deposition) - 12 Jun 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
Keywords :  Eight-Stranded Beta-Sheet, Disulfide Bond, De Novo Protein Design (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Venkatraman, G. A. Nagana Gowda, P. Balaram
Design And Construction Of An Open Multistranded Beta-Sheet Polypeptide Stabilized By A Disulfide Bridge.
J. Am. Chem. Soc. V. 124 4987 2002
PubMed-ID: 11982362  |  Reference-DOI: 10.1021/JA0174276
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - B4DIMER
    Chains: A, B
    Engineered: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

NMR Structure (1, 6)
No.NameCountTypeFull Name
1DPR6Mod. Amino AcidD-PROLINE

(-) Sites  (0, 0)

(no "Site" information available for 1JY4)

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:31 -B:31

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JY4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JY4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JY4)

(-) Exons   (0, 0)

(no "Exon" information available for 1JY4)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains d1jy4a_ A: B4dimer                  SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeeeee..eeeeeeee..eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  1jy4 A  1 RGECKFTVxGRTALNTxAVQKWHFVLxGYKCEILA 35
                                    10      | 20      | 30     
                                    9-DPR  17-DPR    27-DPR    


Chain B from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains d1jy4b_ B: B4dimer                  SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeeeee..eeeeeeee..eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  1jy4 B  1 RGECKFTVxGRTALNTxAVQKWHFVLxGYKCEILA 35
                                    10      | 20      | 30     
                                    9-DPR  17-DPR    27-DPR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Designed proteins (167)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1JY4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JY4)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1JY4)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1jy6 B4DIMERA: A DE NOVO DESIGNED FOUR-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND