1JUB - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   THE K136E MUTANT OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A

Authors :   S. Norager, S. Arent, O. Bjornberg, M. Ottosen, L. Lo Leggio, K. F. Jens S. Larsen

Date :   24 Aug 01 (Deposition) - 09 Sep 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym./Biol. Unit : A,B

Keywords :   Homodimer, Alpha-Beta Barrel, Flavoprotein, Mutant Enzyme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Norager, S. Arent, O. Bjornberg, M. Ottosen, L. Lo Leggio, K. F. Jensen, S. Larsen
Lactococcus Lactis Dihydroorotate Dehydrogenase A Mutants Reveal Important Facets Of The Enzymatic Function
J. Biol. Chem. V. 278 28812 2003
PubMed-ID: 12732650 | Reference-DOI: 10.1074/JBC.M303767200
(for further references see the PDB file header)

Molecule 1 - DIHYDROOROTATE DEHYDROGENASE A
	Chains	:	A, B
	EC Number	:	1.3.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PUHE23
	Expression System Strain	:	SO6645
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PYRD
	Mutation	:	YES
	Organism Scientific	:	LACTOCOCCUS LACTIS
	Organism Taxid	:	1358

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 9)

No.	Name	Count	Type	Full Name
1	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	GOL	5	Ligand/Ion	GLYCEROL
3	MG	2	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:33 , SER A:35 , HOH A:1103 , HOH A:1141 , HOH A:1162 , HOH A:1262	BINDING SITE FOR RESIDUE MG A 850
2	AC2	SOFTWARE	LYS B:33 , SER B:35 , HOH B:1882 , HOH B:1996 , HOH B:2054	BINDING SITE FOR RESIDUE MG B 850
3	AC3	SOFTWARE	ALA A:18 , SER A:19 , GLY A:20 , LYS A:43 , SER A:44 , TYR A:58 , ASN A:67 , MET A:69 , ASN A:127 , LYS A:164 , VAL A:192 , ASN A:193 , GLY A:221 , ILE A:224 , THR A:248 , GLY A:249 , GLY A:250 , GLY A:271 , THR A:272 , HOH A:1005 , HOH A:1011 , HOH A:1012 , HOH A:1017	BINDING SITE FOR RESIDUE FMN A 800
4	AC4	SOFTWARE	ALA B:18 , SER B:19 , GLY B:20 , LYS B:43 , SER B:44 , TYR B:58 , ASN B:67 , MET B:69 , ASN B:127 , LYS B:164 , VAL B:192 , ASN B:193 , GLY B:221 , ILE B:224 , THR B:248 , GLY B:249 , GLY B:250 , GLY B:271 , THR B:272 , HOH B:1801 , HOH B:1805 , HOH B:1812 , HOH B:1814	BINDING SITE FOR RESIDUE FMN B 1800
5	AC5	SOFTWARE	LYS A:213 , PHE A:216 , LEU B:171 , ALA B:234 , ARG B:238 , HOH B:1876	BINDING SITE FOR RESIDUE GOL B 1001
6	AC6	SOFTWARE	LEU A:171 , ALA A:234 , ARG A:238 , HOH A:1104 , LYS B:213 , ASP B:214 , PHE B:216	BINDING SITE FOR RESIDUE GOL A 1002
7	AC7	SOFTWARE	TYR A:168 , PHE A:169 , HIS A:173 , HOH A:1042	BINDING SITE FOR RESIDUE GOL A 1003
8	AC8	SOFTWARE	ALA A:9 , LYS A:10 , GLY A:94	BINDING SITE FOR RESIDUE GOL A 1004
9	AC9	SOFTWARE	ALA B:9 , LYS B:10 , GLY B:94	BINDING SITE FOR RESIDUE GOL B 1005

(no "SS Bond" information available for 1JUB)

Asymmetric/Biological Unit

No.	Residues
1	Leu A:55	-	Pro A:56
2	Glu A:136	-	Pro A:137
3	Ser A:191	-	Val A:192
4	Leu B:55	-	Pro B:56
5	Ser B:191	-	Val B:192

(no "SAP(SNP)/Variant" information available for 1JUB)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DHODEHASE_1	PS00911	Dihydroorotate dehydrogenase signature 1.	PYRDA_LACLC	38-57	2	A:38-57 B:38-57
1	DHODEHASE_1	PS00911	Dihydroorotate dehydrogenase signature 1.	PYRDA_LACLM	38-57	2	A:38-57 B:38-57
2	DHODEHASE_2	PS00912	Dihydroorotate dehydrogenase signature 2.	PYRDA_LACLC	245-265	2	A:245-265 B:245-265
2	DHODEHASE_2	PS00912	Dihydroorotate dehydrogenase signature 2.	PYRDA_LACLM	245-265	2	A:245-265 B:245-265

(no "Exon" information available for 1JUB)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:311
 aligned with PYRDA_LACLC | Q53ZE5 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 
          PYRDA_LACLC     1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
               SCOP domains d1juba_ A: Dihydroorotate dehydrogenase                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jubA01 A:1-52,A:71-194,A:221-311 Aldolase class I  1jubA02           1jubA01 A:1-52,A:71-194,A:221-311 Aldolase class I                                                                          1jubA02 A:53-70,A:195-220 1jubA01 A:1-52,A:71-194,A:221-311 Aldolase class I                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee...eee.......hhhhhhhhhhh......................eeee..eeee.......hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhhh....eeeee..........hhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh.....eeee...eeeee.ee....ee..hhhh.eeeeehhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh..eeeehhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------DHODEHASE_1         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DHODEHASE_2          ---------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jub A   1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310

Chain A from PDB  Type:PROTEIN  Length:311
 aligned with PYRDA_LACLM | A2RJT9 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 
          PYRDA_LACLM     1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
               SCOP domains d1juba_ A: Dihydroorotate dehydrogenase                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jubA01 A:1-52,A:71-194,A:221-311 Aldolase class I  1jubA02           1jubA01 A:1-52,A:71-194,A:221-311 Aldolase class I                                                                          1jubA02 A:53-70,A:195-220 1jubA01 A:1-52,A:71-194,A:221-311 Aldolase class I                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee...eee.......hhhhhhhhhhh......................eeee..eeee.......hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhhh....eeeee..........hhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh.....eeee...eeeee.ee....ee..hhhh.eeeeehhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh..eeeehhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------DHODEHASE_1         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DHODEHASE_2          ---------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jub A   1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310

Chain B from PDB  Type:PROTEIN  Length:311
 aligned with PYRDA_LACLC | Q53ZE5 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 
          PYRDA_LACLC     1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
               SCOP domains d1jubb_ B: Dihydroorotate dehydrogenase                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jubB01 B:1-52,B:71-194,B:221-311 Aldolase class I  1jubB02           1jubB01 B:1-52,B:71-194,B:221-311 Aldolase class I                                                                          1jubB02 B:53-70,B:195-220 1jubB01 B:1-52,B:71-194,B:221-311 Aldolase class I                                          CATH domains
           Pfam domains (1) DHO_dh-1jubB01 B:1-293                                                                                                                                                                                                                                                                               ------------------ Pfam domains (1)
           Pfam domains (2) DHO_dh-1jubB02 B:1-293                                                                                                                                                                                                                                                                               ------------------ Pfam domains (2)
         Sec.struct. author ...eee..eee...eee.......hhhhhhhhhhh......................eeee..eeee.......hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhhh....eeeee..........hhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh.....eeee...eeeee.ee....ee..hhhh.eeeeehhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh..eeeehhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------DHODEHASE_1         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DHODEHASE_2          ---------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jub B   1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310

Chain B from PDB  Type:PROTEIN  Length:311
 aligned with PYRDA_LACLM | A2RJT9 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 
          PYRDA_LACLM     1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
               SCOP domains d1jubb_ B: Dihydroorotate dehydrogenase                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jubB01 B:1-52,B:71-194,B:221-311 Aldolase class I  1jubB02           1jubB01 B:1-52,B:71-194,B:221-311 Aldolase class I                                                                          1jubB02 B:53-70,B:195-220 1jubB01 B:1-52,B:71-194,B:221-311 Aldolase class I                                          CATH domains
           Pfam domains (1) DHO_dh-1jubB01 B:1-293                                                                                                                                                                                                                                                                               ------------------ Pfam domains (1)
           Pfam domains (2) DHO_dh-1jubB02 B:1-293                                                                                                                                                                                                                                                                               ------------------ Pfam domains (2)
         Sec.struct. author ...eee..eee...eee.......hhhhhhhhhhh......................eeee..eeee.......hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhhh....eeeee..........hhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh.....eeee...eeeee.ee....ee..hhhh.eeeeehhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh..eeeehhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------DHODEHASE_1         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DHODEHASE_2          ---------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jub B   1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL 311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: FMN-linked oxidoreductases (290)

Family: FMN-linked oxidoreductases (242)

Protein domain: Dihydroorotate dehydrogenase (90)

Lactococcus lactis, isozyme A [TaxId: 1358] (9)

1a	d1juba_	A:
1b	d1jubb_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Lactococcus lactis. Organism_taxid: 1358. (3)

1a	1jubA01	A:1-52,A:71-194,A:221-311
1b	1jubB01	B:1-52,B:71-194,B:221-311

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: Dihydroorotate Dehydrogenase A; chain A, domain 2 (22)

Homologous Superfamily: Dihydroorotate Dehydrogenase A, chain A, domain 2 (22)

Lactococcus lactis. Organism_taxid: 1358. (3)

2a	1jubA02	A:53-70,A:195-220
2b	1jubB02	B:53-70,B:195-220

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TIM_barrel (694)

Family: DHO_dh (22)

Lactococcus lactis subsp. cremoris (Streptococcus cremoris) (4)

1a	DHO_dh-1jubB01	B:1-293
1b	DHO_dh-1jubB02	B:1-293

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (PYRDA_LACLM | A2RJT9)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:1990663	dihydroorotate dehydrogenase (fumarate) activity	Catalysis of the reaction: (S)-dihydroorotate + fumarate = orotate + succinate.
	GO:0004152	dihydroorotate dehydrogenase activity	Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0044205	'de novo' UMP biosynthetic process	The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.
	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
	GO:0006222	UMP biosynthetic process	The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006221	pyrimidine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B (PYRDA_LACLC | Q53ZE5)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:1990663	dihydroorotate dehydrogenase (fumarate) activity	Catalysis of the reaction: (S)-dihydroorotate + fumarate = orotate + succinate.
	GO:0004152	dihydroorotate dehydrogenase activity	Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0044205	'de novo' UMP biosynthetic process	The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.
	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
	GO:0006222	UMP biosynthetic process	The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006221	pyrimidine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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		AC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:136 - Pro A:137	[ RasMol ]
		Leu A:55 - Pro A:56	[ RasMol ]
		Leu B:55 - Pro B:56	[ RasMol ]
		Ser A:191 - Val A:192	[ RasMol ]
		Ser B:191 - Val B:192	[ RasMol ]

Jmol
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Molscript
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Access by PDB/NDB ID
	1jub
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PYRDA_LACLC \| Q53ZE5
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	PYRDA_LACLM \| A2RJT9
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.3.3.1
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

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	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PYRDA_LACLC \| Q53ZE5
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PYRDA_LACLM \| A2RJT9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1dor	1DOR CONTAINS NATIVE LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A
1jqv	1JQV CONTAINS K213E MUTANT OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A
1jqx	1JQX CONTAINS R57A MUTANT OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A
1jrb	1JRB CONTAINS P56A MUTANT OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A
1jrc	1JRC CONTAINS N67A MUTANT OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A
1jue	1JUE CONTAINS STRUCTURE OF NATIVE LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A AT 1.8A RESOLUTION
2dor	2DOR CONTAINS NATIVE LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A COMPLEXED WITH OROTATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (2, 4)

Pfam Domains (1, 2)

Gene Ontology (11, 22)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File