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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HYDROXYNITRILE LYASE FROM ALMOND
 
Authors :  I. Dreveny, K. Gruber, A. Glieder, A. Thompson, C. Kratky
Date :  23 Aug 01  (Deposition) - 04 Sep 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydroxynitrile Lyase, Flavin, Gmc Oxidoreductase, Almond, Cyanogenesis, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Dreveny, K. Gruber, A. Glieder, A. Thompson, C. Kratky
The Hydroxynitrile Lyase From Almond: A Lyase That Looks Like An Oxidoreductase.
Structure V. 9 803 2001
PubMed-ID: 11566130  |  Reference-DOI: 10.1016/S0969-2126(01)00639-6

(-) Compounds

Molecule 1 - HYDROXYNITRILE LYASE
    Chains: A, B
    EC Number: 4.1.2.10
    Organism Common: ALMOND
    Organism Scientific: PRUNUS DULCIS
    Organism Taxid: 3755

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 29)

Asymmetric Unit (7, 29)
No.NameCountTypeFull Name
1BMA5Ligand/IonBETA-D-MANNOSE
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FUC4Ligand/IonALPHA-L-FUCOSE
4IPA2Ligand/IonISOPROPYL ALCOHOL
5MAN2Ligand/IonALPHA-D-MANNOSE
6NAG13Ligand/IonN-ACETYL-D-GLUCOSAMINE
7NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 1 (7, 15)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FUC2Ligand/IonALPHA-L-FUCOSE
4IPA1Ligand/IonISOPROPYL ALCOHOL
5MAN1Ligand/IonALPHA-D-MANNOSE
6NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
7NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 2 (6, 14)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FUC2Ligand/IonALPHA-L-FUCOSE
4IPA1Ligand/IonISOPROPYL ALCOHOL
5MAN1Ligand/IonALPHA-D-MANNOSE
6NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
7NDG-1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:118 , SER A:120 , ILE A:121 , HIS A:177 , GLU A:179 , ASN A:323 , NDG A:538 , HOH A:4096 , HOH A:4413 , HOH A:4513BINDING SITE FOR RESIDUE NAG A 537
02AC2SOFTWARENAG A:537BINDING SITE FOR RESIDUE NDG A 538
03AC3SOFTWAREARG A:116 , ASP A:132 , ASN A:135 , ASP A:176 , NAG A:540 , FUC A:541 , HOH A:4064 , HOH A:4374 , HOH A:4401 , HOH A:4429 , HOH A:4477BINDING SITE FOR RESIDUE NAG A 539
04AC4SOFTWAREGLU A:178 , NAG A:539 , FUC A:541 , BMA A:542 , HOH A:4405 , HOH A:4441 , HOH A:4448 , HOH A:4518 , HOH A:4567BINDING SITE FOR RESIDUE NAG A 540
05AC5SOFTWARENAG A:539 , NAG A:540 , HOH B:4204BINDING SITE FOR RESIDUE FUC A 541
06AC6SOFTWARENAG A:540 , MAN A:543 , HOH A:4471 , HOH A:4518 , HOH B:4188BINDING SITE FOR RESIDUE BMA A 542
07AC7SOFTWAREHIS A:171 , GLU A:178 , BMA A:542 , HOH A:4156 , HOH A:4481 , HOH A:4543BINDING SITE FOR RESIDUE MAN A 543
08AC8SOFTWARELEU A:366 , ASN A:392 , NAG A:545 , FUC A:546 , HOH A:4072 , HOH A:4315 , HOH A:4459BINDING SITE FOR RESIDUE NAG A 544
09AC9SOFTWARENAG A:544 , FUC A:546 , BMA A:547 , HOH A:4459 , HOH A:4560BINDING SITE FOR RESIDUE NAG A 545
10BC1SOFTWARENAG A:544 , NAG A:545 , HOH A:4459BINDING SITE FOR RESIDUE FUC A 546
11BC2SOFTWAREASP A:422 , NAG A:545 , BMA A:548 , HOH B:4173BINDING SITE FOR RESIDUE BMA A 547
12BC3SOFTWARELYS A:416 , PRO A:417 , ASP A:422 , BMA A:547 , HOH A:4344 , HOH A:4403 , HOH A:4535 , HOH A:4573 , SER B:151BINDING SITE FOR RESIDUE BMA A 548
13BC4SOFTWARELEU A:350 , ASN A:352 , HOH A:4576 , HOH A:4580BINDING SITE FOR RESIDUE NAG A 607
14BC5SOFTWAREASN B:118 , SER B:120 , HIS B:177 , GLU B:179 , ILE B:321 , ASN B:323 , NAG B:538 , HOH B:4267 , HOH B:4511 , HOH B:4658BINDING SITE FOR RESIDUE NAG B 537
15BC6SOFTWAREASN B:323 , NAG B:537BINDING SITE FOR RESIDUE NAG B 538
16BC7SOFTWAREARG B:116 , ASP B:132 , ASN B:135 , ASP B:176 , NAG B:540 , FUC B:541 , HOH B:4105 , HOH B:4262 , HOH B:4493 , HOH B:4507 , HOH B:4650BINDING SITE FOR RESIDUE NAG B 539
17BC8SOFTWAREGLU B:178 , NAG B:539 , FUC B:541 , BMA B:542 , HOH B:4730BINDING SITE FOR RESIDUE NAG B 540
18BC9SOFTWARENAG B:539 , NAG B:540BINDING SITE FOR RESIDUE FUC B 541
19CC1SOFTWAREHOH A:4482 , NAG B:540 , MAN B:543 , HOH B:4104BINDING SITE FOR RESIDUE BMA B 542
20CC2SOFTWAREHIS B:171 , GLU B:178 , BMA B:542 , HOH B:4619 , HOH B:4697 , HOH B:4715BINDING SITE FOR RESIDUE MAN B 543
21CC3SOFTWARELEU B:366 , ASN B:392 , NAG B:545 , FUC B:546 , HOH B:4629 , HOH B:4674BINDING SITE FOR RESIDUE NAG B 544
22CC4SOFTWARENAG B:544 , FUC B:546 , BMA B:547BINDING SITE FOR RESIDUE NAG B 545
23CC5SOFTWARENAG B:544 , NAG B:545 , HOH B:4674BINDING SITE FOR RESIDUE FUC B 546
24CC6SOFTWARENAG B:545BINDING SITE FOR RESIDUE BMA B 547
25CC7SOFTWARELEU B:306 , ASN B:352 , ASN B:430 , HOH B:4034 , HOH B:4044 , HOH B:4142 , HOH B:4168 , HOH B:4425 , HOH B:4655 , HOH B:4763BINDING SITE FOR RESIDUE NAG B 607
26CC8SOFTWAREGLY A:33 , GLY A:35 , THR A:36 , SER A:37 , LEU A:54 , GLU A:55 , ARG A:56 , VAL A:98 , GLY A:100 , ARG A:101 , VAL A:102 , GLY A:105 , THR A:106 , ASN A:110 , ALA A:111 , GLY A:112 , VAL A:113 , ALA A:215 , VAL A:217 , SER A:256 , ALA A:257 , VAL A:379 , TRP A:458 , HIS A:459 , ASP A:486 , GLY A:487 , HIS A:497 , PRO A:498 , GLN A:499 , TYR A:502 , HOH A:4004 , HOH A:4015 , HOH A:4020 , HOH A:4033 , HOH A:4101 , HOH A:4114 , HOH A:4269 , HOH A:4417 , HOH A:4421BINDING SITE FOR RESIDUE FAD A 2001
27CC9SOFTWAREGLY B:33 , GLY B:35 , THR B:36 , SER B:37 , LEU B:54 , GLU B:55 , ARG B:56 , VAL B:98 , GLY B:100 , ARG B:101 , VAL B:102 , GLY B:105 , THR B:106 , ASN B:110 , ALA B:111 , GLY B:112 , VAL B:113 , ALA B:215 , VAL B:217 , SER B:256 , ALA B:257 , VAL B:379 , TRP B:458 , HIS B:459 , ASP B:486 , GLY B:487 , HIS B:497 , PRO B:498 , GLN B:499 , TYR B:502 , HOH B:4211 , HOH B:4215 , HOH B:4223 , HOH B:4226 , HOH B:4269 , HOH B:4449 , HOH B:4583 , HOH B:4587 , HOH B:4644BINDING SITE FOR RESIDUE FAD B 2002
28DC1SOFTWAREILE A:121 , SER A:125 , PHE A:490 , TYR A:492 , HOH A:4086 , HOH A:4154 , HOH A:4611BINDING SITE FOR RESIDUE IPA A 4001
29DC2SOFTWAREILE B:121 , SER B:125 , PHE B:490 , TYR B:492 , HOH B:4082 , HOH B:4272 , HOH B:4590BINDING SITE FOR RESIDUE IPA B 4002

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:399 -A:450
2B:399 -B:450

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1His A:168 -Pro A:169
2Ala A:225 -Pro A:226
3Gly A:364 -Pro A:365
4His B:168 -Pro B:169
5Ala B:225 -Pro B:226
6Gly B:364 -Pro B:365

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JU2)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMC_OXRED_1PS00623 GMC oxidoreductases signature 1.MDL2_PRUDU127-150
 		  2A:100-123
B:100-123
2GMC_OXRED_2PS00624 GMC oxidoreductases signature 2.MDL2_PRUDU285-299
 		  2A:258-272
B:258-272
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMC_OXRED_1PS00623 GMC oxidoreductases signature 1.MDL2_PRUDU127-150
 		  1A:100-123
-
2GMC_OXRED_2PS00624 GMC oxidoreductases signature 2.MDL2_PRUDU285-299
 		  1A:258-272
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMC_OXRED_1PS00623 GMC oxidoreductases signature 1.MDL2_PRUDU127-150
 		  1-
B:100-123
2GMC_OXRED_2PS00624 GMC oxidoreductases signature 2.MDL2_PRUDU285-299
 		  1-
B:258-272

(-) Exons   (0, 0)

(no "Exon" information available for 1JU2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:521
 aligned with MDL2_PRUDU | Q945K2 from UniProtKB/Swiss-Prot  Length:563

    Alignment length:521
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547 
           MDL2_PRUDU    28 LATTSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSASYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548
               SCOP domains d1ju2a1 A:1-293,A:464-521 Hydroxynitrile lyase                                                                                                                                                                                                                                                       d1ju2a2 A:294-463 Hydroxynitrile lyase                                                                                                                                    d1ju2a1 A:1-293,A:464-521 Hydroxynitrile lyase             SCOP domains
               CATH domains --------1ju2A01 A:9-146,A:192-297,A:367-389,A:457-521  [code=3.50.50.60, no name defined]                                                         ---------------------------------------------1ju2A01 A:9-146,A:192-297,A:367-389,A:457-521  [code=3.50.50.60, no name defined]                         ---------------------------------------------------------------------1ju2A01                -------------------------------------------------------------------1ju2A01 A:9-146,A:192-297,A:367-389,A:457-521                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh.eee.hhh..eeeeeeeee....hhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhh.......eeeee.....eeeee...hhhhhh...ee...............hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh....eeee......eeee.ee.........hhhhhhhhh....eeeee..eeeeeee.......eeeeeee.....eeeeeeeeeeeeee.hhhhhhhhhhhhh.eehhhhhhhh.....ee.....eeee..eeeeeee............eeee...eeeeeeee......................eeeeeeee......eeee...........ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhee....ee...................eee.hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------GMC_OXRED_1             --------------------------------------------------------------------------------------------------------------------------------------GMC_OXRED_2    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ju2 A   1 LATTSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520 


Chain B from PDB  Type:PROTEIN  Length:521
 aligned with MDL2_PRUDU | Q945K2 from UniProtKB/Swiss-Prot  Length:563

    Alignment length:521
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547 
           MDL2_PRUDU    28 LATTSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSASYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548
               SCOP domains d1ju2b1 B:1-293,B:464-521 Hydroxynitrile lyase                                                                                                                                                                                                                                                       d1ju2b2 B:294-463 Hydroxynitrile lyase                                                                                                                                    d1ju2b1 B:1-293,B:464-521 Hydroxynitrile lyase             SCOP domains
               CATH domains --------1ju2B01 B:9-146,B:192-297,B:367-389,B:457-521  [code=3.50.50.60, no name defined]                                                         ---------------------------------------------1ju2B01 B:9-146,B:192-297,B:367-389,B:457-521  [code=3.50.50.60, no name defined]                         ---------------------------------------------------------------------1ju2B01                -------------------------------------------------------------------1ju2B01 B:9-146,B:192-297,B:367-389,B:457-521                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh.eee.hhh..eeeeeeeee....hhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhh.......eeeee.....eeeee...hhhhhh...ee...............hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh....eeee......eeee.ee.........hhhhhhhhh....eeeee..eeeeeeeee...eeeeeeeee.....eeeeeeeeeeeeee.hhhhhhhhhhhhh.eehhhhhhhh.....ee.....eeee..eeeeeee............eeee...eeeeeeee......................eeeeeeee......eeee...........eee.....hhhhhhhhhhhhhhhhhhhh...hhhhh...........ee.........hhhhhhhhhhhhhee....eee..................eee.............hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------GMC_OXRED_1             --------------------------------------------------------------------------------------------------------------------------------------GMC_OXRED_2    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ju2 B   1 LATTSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(bba) Sandwich (528)
(-)
Topology: FAD/NAD(P)-binding domain (373)
(-)
Homologous Superfamily: [code=3.50.50.60, no name defined] (373)
(-)
Almond (Prunus dulcis) (1)
1a1ju2A01A:9-146,A:192-297,A:367-389,A:457-521
1b1ju2B01B:9-146,B:192-297,B:367-389,B:457-521

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JU2)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (MDL2_PRUDU | Q945K2)
molecular function
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046593    mandelonitrile lyase activity    Catalysis of the reaction: mandelonitrile = cyanide + benzaldehyde.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0050898    nitrile metabolic process    The chemical reactions and pathways involving nitriles, an organic compound containing trivalent nitrogen attached to one carbon atom. The nitriles are named with reference to the acids produced by their decomposition; for example, hydrocyanic acid is formic nitrile, and methyl cyanide is acetic nitrile.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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        MDL2_PRUDU | Q945K2: 3gdn 3gdp

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