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(-) Description

Title :  FEZ-1 METALLO-BETA-LACTAMASE FROM LEGIONELLA GORMANII MODELLED WITH D-CAPTOPRIL
 
Authors :  I. Garcia-Saez, P. S. Mercuri, R. Kahn, C. Papamicael, J. M. Frere, M. Ga O. Dideberg
Date :  20 Aug 01  (Deposition) - 21 Jan 03  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A
Keywords :  Monomer With Alpha-Beta/Beta-Alpha Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Garcia-Saez, P. S. Mercuri, C. Papamicael, R. Kahn, J. M. Frere, M. Galleni, G. M. Rossolini, O. Dideberg
Three-Dimensional Structure Of Fez-1, A Monomeric Subclass B3 Metallo-[Beta]-Lactamase From Fluoribacter Gormanii, In Native Form And In Complex With -Captopril
J. Mol. Biol. V. 325 651 2003
PubMed-ID: 12507470  |  Reference-DOI: 10.1016/S0022-2836(02)01271-8

(-) Compounds

Molecule 1 - FEZ-1, CLASS B3 METALLO-BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDML1810
    Expression System Strain: BL21(DE3)(PLYSS)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 20-282
    Gene: BLAFEZ-1
    Organism Scientific: FLUORIBACTER GORMANII
    Organism Taxid: 464

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

Asymmetric/Biological Unit (5, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MCO1Ligand/Ion1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID
4SO44Ligand/IonSULFATE ION
5ZN2Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:120 , HIS A:121 , HIS A:263 , ZN A:401 , SO4 A:500BINDING SITE FOR RESIDUE ZN A 400
2AC2SOFTWAREHIS A:116 , HIS A:118 , HIS A:196 , ZN A:400 , SO4 A:500BINDING SITE FOR RESIDUE ZN A 401
3AC3SOFTWAREHIS A:118 , ASP A:120 , HIS A:196 , ASN A:225 , HIS A:263 , ZN A:400 , ZN A:401BINDING SITE FOR RESIDUE SO4 A 500
4AC4SOFTWARELYS A:100 , LYS A:105 , PHE A:106 , SER A:107 , HOH A:860 , HOH A:910BINDING SITE FOR RESIDUE SO4 A 501
5AC5SOFTWAREARG A:78 , HIS A:155 , LYS A:278 , HOH A:718 , HOH A:830BINDING SITE FOR RESIDUE SO4 A 502
6AC6SOFTWARELYS A:212 , TYR A:214 , THR A:288 , LYS A:291BINDING SITE FOR RESIDUE SO4 A 503
7AC7SOFTWAREHOH A:912BINDING SITE FOR RESIDUE CL A 600
8AC8SOFTWAREHIS A:196 , SER A:221 , MET A:266 , TYR A:293 , LYS A:297BINDING SITE FOR RESIDUE MCO A 700
9AC9SOFTWAREMET A:137 , LYS A:172 , ARG A:179 , VAL A:180 , GLU A:181 , SER A:277 , LYS A:278 , HOH A:926BINDING SITE FOR RESIDUE GOL A 601

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:256 -A:290

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JT1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JT1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JT1)

(-) Exons   (0, 0)

(no "Exon" information available for 1JT1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with Q9K578_9GAMM | Q9K578 from UniProtKB/TrEMBL  Length:282

    Alignment length:262
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  
         Q9K578_9GAMM    21 YPMPNPFPPFRIAGNLYYVGTDDLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDIFLGSHAGMFDLKNKYVLLQKGQNNPFVDPTGCKNYIEQKANDFYTELKKQETA 282
               SCOP domains d1jt1a_ A: Zn metallo-beta-lactamase                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1jt1A00 A:36-311 Metallo-beta-lactamase, chain A                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------Lactamase_B-1jt1A01 A:55-263                                                                                                                                                                        ------------------------------------------------ Pfam domains
         Sec.struct. author .........eeee..eee........eeeee..eeeee...hhhhhhhhhhhhhhh..hhh.eeeee....hhhhhhhhhhhhhhhh.eeeee..hhhhhhh..........hhhhh.......eee....eeee..eeeeeee........eeeeeeeee..eeeeeeee..................hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jt1 A  36 YPMPNPFPPFRIAGNLYYVGTDDLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDIFLGSHAGMFDLKNKYVLLSKGQNNPFVDPTGCKNYIEQKANDFYTELKKQETG 311
                                    45|       56||      74 ||     85 ||     96       106       116       126       136       146       156 ||    167       177       187    || 198       208       218       228       238       248   ||  259       269       279       289       299       309  
                                    45|        57|        76|       87|                                                                  158|                             192|                                                       252|                                                         
                                     47         66         78        89                                                                   160                              194                                                        254
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Metallo-HOrase (67)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9K578_9GAMM | Q9K578)
molecular function
    GO:0008800    beta-lactamase activity    Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Cis Peptide Bonds
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  1jt1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9K578_9GAMM | Q9K578: 1k07 1l9y

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