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Title :   CRYSTAL STRUCTURE OF C77S HIPIP: A SERINE LIGATED [4FE-4S] CLUSTER

Authors :   S. S. Mansy, Y. Xiong, C. Hemann, R. Hille, M. Sundaralingam, J. A. Cowan

Date :   16 Aug 01 (Deposition) - 25 Jan 02 (Release) - 17 Apr 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Serine Ligated [4Fe-4S] Cluster, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. S. Mansy, Y. Xiong, C. Hemann, R. Hille, M. Sundaralingam, J. A. Cowa
Crystal Structure And Stability Studies Of C77S Hipip: A Serine Ligated [4Fe-4S] Cluster.
Biochemistry V. 41 1195 2002
PubMed-ID: 11802718 | Reference-DOI: 10.1021/BI011811Y

Molecule 1 - HIGH-POTENTIAL IRON PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3) PLYSS
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 38-122 OF P00260
	Mutation	:	YES
	Organism Scientific	:	ALLOCHROMATIUM VINOSUM
	Organism Taxid	:	1049
	Synonym	:	HIGH POTENTIAL IRON-SULFUR PROTEIN; HIPIP

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	SF4	4	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:47 , CYS A:50 , CYS A:67 , SER A:81	BINDING SITE FOR RESIDUE SF4 A 90
2	AC2	SOFTWARE	CYS B:147 , CYS B:150 , CYS B:167 , SER B:181 , SER B:183	BINDING SITE FOR RESIDUE SF4 B 190
3	AC3	SOFTWARE	TYR C:223 , CYS C:247 , CYS C:250 , CYS C:267 , LEU C:269 , SER C:281	BINDING SITE FOR RESIDUE SF4 C 290
4	AC4	SOFTWARE	CYS D:347 , CYS D:350 , CYS D:367 , SER D:381	BINDING SITE FOR RESIDUE SF4 D 390

(no "SS Bond" information available for 1JS2)

(no "Cis Peptide Bond" information available for 1JS2)

(no "SAP(SNP)/Variant" information available for 1JS2)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HIPIP	PS51373	High potential iron-sulfur proteins family profile.	HIP_ALLVD	38-122	4	A:5-89 B:105-189 C:205-289 D:305-389

(no "Exon" information available for 1JS2)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:89
 aligned with HIP_ALLVD | P00260 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:93
                                    39        49        59        69        79        89        99       109       119   
            HIP_ALLVD    30 VGFGTARASAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWCASWTLKAG 122
               SCOP domains d1j    s2a_ A: HIPIP (high potential iron protein)                                            SCOP domains
               CATH domains 1js    2A00 A:1-89 High-Potential Iron-Sulfur Protein, subunit A                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----...........hhhhhhh....hhhhhhhhhhh....hhhhhhhhhh..ee.........eeee.......ee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HIPIP  PDB: A:5-89 UniProt: 38-122                                                    PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 1js2 A   1 MEF----MSAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWSASWTLKAG  89
                              |    | 6        16        26        36        46        56        66        76        86   
                              3    4

Chain B from PDB  Type:PROTEIN  Length:89
 aligned with HIP_ALLVD | P00260 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:93
                                    39        49        59        69        79        89        99       109       119   
            HIP_ALLVD    30 VGFGTARASAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWCASWTLKAG 122
               SCOP domains d1j    s2b_ B: HIPIP (high potential iron protein)                                            SCOP domains
               CATH domains 1js    2B00 B:101-189 High-Potential Iron-Sulfur Protein, subunit A                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----...........hhhhhhhh...hhhhhhhhhhh....hhhhhhhhhh..ee.........eeee.......ee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HIPIP  PDB: B:105-189 UniProt: 38-122                                                 PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 1js2 B 101 MEF----MSAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWSASWTLKAG 189
                              |    106       116       126       136       146       156       166       176       186   
                            103  104

Chain C from PDB  Type:PROTEIN  Length:89
 aligned with HIP_ALLVD | P00260 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:93
                                    39        49        59        69        79        89        99       109       119   
            HIP_ALLVD    30 VGFGTARASAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWCASWTLKAG 122
               SCOP domains d1j    s2c_ C: HIPIP (high potential iron protein)                                            SCOP domains
               CATH domains 1js    2C00 C:201-289 High-Potential Iron-Sulfur Protein, subunit A                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----...........hhhhhhhh...hhhhhhhhhhh....hhhhhhhhhh..ee.........eeee.......ee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HIPIP  PDB: C:205-289 UniProt: 38-122                                                 PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 1js2 C 201 MEF----MSAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWSASWTLKAG 289
                              |    206       216       226       236       246       256       266       276       286   
                            203  204

Chain D from PDB  Type:PROTEIN  Length:89
 aligned with HIP_ALLVD | P00260 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:93
                                    39        49        59        69        79        89        99       109       119   
            HIP_ALLVD    30 VGFGTARASAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWCASWTLKAG 122
               SCOP domains d1j    s2d_ D: HIPIP (high potential iron protein)                                            SCOP domains
               CATH domains 1js    2D00 D:301-389 High-Potential Iron-Sulfur Protein, subunit A                           CATH domains
           Pfam domains (1) ----------------HIPIP-1js2D01 D:313-385                                                  ---- Pfam domains (1)
           Pfam domains (2) ----------------HIPIP-1js2D02 D:313-385                                                  ---- Pfam domains (2)
           Pfam domains (3) ----------------HIPIP-1js2D03 D:313-385                                                  ---- Pfam domains (3)
           Pfam domains (4) ----------------HIPIP-1js2D04 D:313-385                                                  ---- Pfam domains (4)
         Sec.struct. author ...----...........hhhhhhh....hhhhhhhhhhh....hhhhhhhhhh..ee.........eeee.......ee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HIPIP  PDB: D:305-389 UniProt: 38-122                                                 PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 1js2 D 301 MEF----MSAPANAVAADDATAIALKYNQDATKSERVAAARPGLPPEEQHCANCQFMQADAAGATDEWKGCQLFPGKLINVNGWSASWTLKAG 389
                              |    306       316       326       336       346       356       366       376       386   
                            303  304

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Small proteins (3458)

Fold: HIPIP (high potential iron protein) (22)

Superfamily: HIPIP (high potential iron protein) (22)

Family: HIPIP (high potential iron protein) (22)

Protein domain: HIPIP (high potential iron protein) (22)

Allochromatium vinosum, (formerly Chromatium vinosum) [TaxId: 1049] (8)

1a	d1js2a_	A:
1b	d1js2b_	B:
1c	d1js2c_	C:
1d	d1js2d_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Few Secondary Structures (1120)

Architecture: Irregular (1120)

Topology: High-Potential Iron-Sulfur Protein; Chain A (21)

Homologous Superfamily: High-Potential Iron-Sulfur Protein, subunit A (21)

Allochromatium vinosum. Organism_taxid: 1049. (1)

1a	1js2A00	A:1-89
1b	1js2B00	B:101-189
1c	1js2C00	C:201-289
1d	1js2D00	D:301-389

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: HIPIP] (4)

Family: HIPIP (4)

Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (Chromatium vinosum) (3)

1a	HIPIP-1js2D01	D:313-385
1b	HIPIP-1js2D02	D:313-385
1c	HIPIP-1js2D03	D:313-385
1d	HIPIP-1js2D04	D:313-385

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (HIP_ALLVD | P00260)

molecular function
	GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0019646	aerobic electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric/Biological Unit
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