1JRZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ARG402TYR MUTANT FLAVOCYTOCHROME C3 FROM SHEWANELLA FRIGIDIMARINA

Authors :   C. G. Mowat, R. Moysey, C. S. Miles, D. Leys, M. K. Doherty, P. Taylor, M. D. Walkinshaw, G. A. Reid, S. K. Chapman

Date :   15 Aug 01 (Deposition) - 02 Nov 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Fumarate Reductase, Mutant, Flavocytochrome, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. G. Mowat, R. Moysey, C. S. Miles, D. Leys, M. K. Doherty, P. Taylor, M. D. Walkinshaw, G. A. Reid, S. K. Chapman
Kinetic And Crystallographic Analysis Of The Key Active Site Acid/Base Arginine In A Soluble Fumarate Reductase.
Biochemistry V. 40 12292 2001
PubMed-ID: 11591148 | Reference-DOI: 10.1021/BI011360H
(for further references see the PDB file header)

Molecule 1 - FLAVOCYTOCHROME C
	Chains	:	A, B
	EC Number	:	1.3.99.1
	Engineered	:	YES
	Expression System	:	SHEWANELLA FRIGIDIMARINA NCIMB 400
	Expression System Plasmid	:	PMMB503EH
	Expression System Strain	:	NCIMB400
	Expression System Taxid	:	318167
	Expression System Vector Type	:	PLASMID
	Gene	:	FCC
	Mutation	:	YES
	Organism Scientific	:	SHEWANELLA FRIGIDIMARINA
	Organism Taxid	:	56812
	Synonym	:	FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 14)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FUM	2	Ligand/Ion	FUMARIC ACID
3	HEM	8	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
4	NA	2	Ligand/Ion	SODIUM ION

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FUM	1	Ligand/Ion	FUMARIC ACID
3	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
4	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FUM	1	Ligand/Ion	FUMARIC ACID
3	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
4	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:506 , MET A:507 , GLY A:508 , GLU A:534 , THR A:536 , HOH A:1837	BINDING SITE FOR RESIDUE NA A 1810
02	AC2	SOFTWARE	THR B:506 , MET B:507 , GLY B:508 , GLU B:534 , THR B:536 , HOH B:1036	BINDING SITE FOR RESIDUE NA B 2810
03	AC3	SOFTWARE	HIS A:8 , VAL A:9 , CYS A:14 , CYS A:17 , HIS A:18 , LEU A:24 , SER A:73 , ALA A:74 , HIS A:75 , HEM A:802 , HOH A:1866 , HOH A:2015 , HOH A:2112 , HOH A:2334 , HOH A:2607	BINDING SITE FOR RESIDUE HEM A 801
04	AC4	SOFTWARE	LEU A:4 , PHE A:7 , HIS A:8 , GLN A:12 , SER A:16 , CYS A:36 , CYS A:39 , HIS A:40 , HIS A:72 , TYR A:94 , HEM A:801 , HEM A:803 , HOH A:1948 , HOH A:2274 , HOH A:2370 , HOH A:2438 , HOH A:2480	BINDING SITE FOR RESIDUE HEM A 802
05	AC5	SOFTWARE	HIS A:40 , LEU A:43 , VAL A:46 , THR A:49 , THR A:50 , HIS A:52 , ALA A:57 , HIS A:58 , VAL A:66 , ALA A:67 , CYS A:68 , CYS A:71 , HIS A:72 , PHE A:90 , ASN A:91 , MET A:92 , HEM A:802 , HEM A:804 , HOH A:1823 , HOH A:2110 , HOH A:2155	BINDING SITE FOR RESIDUE HEM A 803
06	AC6	SOFTWARE	HIS A:54 , TYR A:55 , ASN A:56 , SER A:60 , HIS A:61 , PHE A:62 , CYS A:82 , SER A:84 , CYS A:85 , HIS A:86 , PHE A:88 , LEU A:167 , VAL A:374 , LYS A:431 , LYS A:434 , TYR A:435 , HEM A:803 , HOH A:1899 , HOH A:1908 , HOH A:1921 , HOH A:1926 , HOH A:1931 , HOH A:2010 , HOH A:2404 , HOH A:2597	BINDING SITE FOR RESIDUE HEM A 804
07	AC7	SOFTWARE	HIS B:8 , VAL B:9 , CYS B:14 , CYS B:17 , HIS B:18 , LEU B:24 , SER B:73 , ALA B:74 , HIS B:75 , HOH B:1313 , HOH B:1413 , HOH B:1566 , HOH B:1616	BINDING SITE FOR RESIDUE HEM B 801
08	AC8	SOFTWARE	LEU B:4 , PHE B:7 , HIS B:8 , GLN B:12 , SER B:16 , GLN B:35 , CYS B:36 , CYS B:39 , HIS B:40 , HIS B:72 , TYR B:94 , HEM B:803 , HOH B:1835 , HOH B:1953 , HOH B:1958	BINDING SITE FOR RESIDUE HEM B 802
09	AC9	SOFTWARE	HIS B:40 , LEU B:43 , HIS B:52 , ALA B:57 , HIS B:58 , VAL B:66 , ALA B:67 , CYS B:68 , CYS B:71 , HIS B:72 , PHE B:90 , ASN B:91 , MET B:92 , HEM B:802 , HEM B:804 , HOH B:1240 , HOH B:1247 , HOH B:1890 , HOH B:2172	BINDING SITE FOR RESIDUE HEM B 803
10	BC1	SOFTWARE	HIS B:54 , ASN B:56 , SER B:60 , HIS B:61 , PHE B:62 , CYS B:82 , SER B:84 , CYS B:85 , HIS B:86 , PHE B:88 , LEU B:167 , VAL B:374 , LYS B:431 , LYS B:434 , HEM B:803 , HOH B:1198 , HOH B:1199 , HOH B:1221 , HOH B:1253 , HOH B:1382 , HOH B:1605 , HOH B:1692 , HOH B:1829	BINDING SITE FOR RESIDUE HEM B 804
11	BC2	SOFTWARE	GLY A:133 , GLY A:135 , GLY A:136 , ALA A:137 , GLU A:156 , LYS A:157 , GLU A:158 , GLY A:162 , GLY A:163 , ASN A:164 , ALA A:165 , LEU A:167 , ALA A:168 , ALA A:169 , GLY A:170 , GLY A:171 , THR A:276 , ARG A:277 , GLY A:278 , ALA A:312 , THR A:313 , GLY A:314 , THR A:336 , GLN A:338 , ASP A:344 , MET A:375 , HIS A:504 , HIS A:505 , GLY A:533 , GLU A:534 , ARG A:544 , GLY A:547 , ASN A:548 , ALA A:549 , ILE A:550 , ILE A:553 , FUM A:1806 , HOH A:1819 , HOH A:1850 , HOH A:1853 , HOH A:1891	BINDING SITE FOR RESIDUE FAD A 1805
12	BC3	SOFTWARE	VAL B:132 , GLY B:133 , GLY B:135 , GLY B:136 , ALA B:137 , GLU B:156 , LYS B:157 , GLU B:158 , GLY B:162 , GLY B:163 , ASN B:164 , ALA B:165 , LEU B:167 , ALA B:168 , ALA B:169 , GLY B:170 , GLY B:171 , ARG B:277 , GLY B:278 , ALA B:312 , THR B:313 , GLY B:314 , THR B:336 , GLN B:338 , ASP B:344 , MET B:375 , HIS B:504 , HIS B:505 , GLY B:533 , GLU B:534 , ARG B:544 , GLY B:547 , ASN B:548 , ALA B:549 , ILE B:550 , ILE B:553 , HOH B:1008 , HOH B:1014 , HOH B:1037 , HOH B:1104 , HOH B:1144 , FUM B:2806	BINDING SITE FOR RESIDUE FAD B 2805
13	BC4	SOFTWARE	GLY A:170 , HIS A:365 , MET A:375 , THR A:377 , GLU A:378 , TYR A:402 , HIS A:504 , ARG A:544 , GLY A:546 , GLY A:547 , FAD A:1805	BINDING SITE FOR RESIDUE FUM A 1806
14	BC5	SOFTWARE	GLY B:170 , HIS B:365 , MET B:375 , THR B:377 , GLU B:378 , TYR B:402 , HIS B:504 , ARG B:544 , GLY B:546 , GLY B:547 , FAD B:2805	BINDING SITE FOR RESIDUE FUM B 2806

(no "SS Bond" information available for 1JRZ)

(no "Cis Peptide Bond" information available for 1JRZ)

(no "SAP(SNP)/Variant" information available for 1JRZ)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEFR	9-91	2	A:9-91 B:9-91
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEFN	34-116	2	A:9-91 B:9-91

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEFR	9-91	1	A:9-91 -
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEFN	34-116	1	A:9-91 -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEFR	9-91	1	- B:9-91
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEFN	34-116	1	- B:9-91

(no "Exon" information available for 1JRZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:568
 aligned with FRDA_SHEFN | Q07WU7 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:568
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585        
           FRDA_SHEFN    26 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 593
               SCOP domains d1jrza1 A:1-102 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain                d1jrza2 A:103-359,A:506-568 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1jrza3 A:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1jrza2 A:103-359,A:506-568                                     SCOP domains
               CATH domains 1jrzA02 A:1-99 Flavocytochrome C3; Chain A                                                         ---1jrzA03 A:103-359,A:506-568  [code=3.50.50.60, no name defined]                                                                                                                                                                                                  -----1jrzA01 A:365-502 Flavocytochrome C3; Chain A, domain 1                                                                                   ---1jrzA03 A:103-359,A:506-568  [code=3.50.50.60, no name defined] CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhhh.................hhhhh........hhhhhh....................hhhhhhhhhhhhhhhh...ee..eeee..hhhhhhhhhhhhhh...eeee........hhhhh...ee...hhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eee.........eee.....hhhhhhhhhhhhhhhhh..eee..eeeeeeee.....eeeeeeee...eeeeee..eeee.......hhhhhhhhhhhhh...........hhhhhhhhhh...ee....eeeeeeee.......hhhhhhh..eee............hhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..eee.....eee.....eeeeeee....ee.........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------MULTIHEME_CYTC  PDB: A:9-91 UniProt: 34-116                                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jrz A   1 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560

Chain A from PDB  Type:PROTEIN  Length:568
 aligned with FRDA_SHEFR | P0C278 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:568
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560        
           FRDA_SHEFR     1 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLEEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWQRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568
               SCOP domains d1jrza1 A:1-102 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain                d1jrza2 A:103-359,A:506-568 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1jrza3 A:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1jrza2 A:103-359,A:506-568                                     SCOP domains
               CATH domains 1jrzA02 A:1-99 Flavocytochrome C3; Chain A                                                         ---1jrzA03 A:103-359,A:506-568  [code=3.50.50.60, no name defined]                                                                                                                                                                                                  -----1jrzA01 A:365-502 Flavocytochrome C3; Chain A, domain 1                                                                                   ---1jrzA03 A:103-359,A:506-568  [code=3.50.50.60, no name defined] CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhhh.................hhhhh........hhhhhh....................hhhhhhhhhhhhhhhh...ee..eeee..hhhhhhhhhhhhhh...eeee........hhhhh...ee...hhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eee.........eee.....hhhhhhhhhhhhhhhhh..eee..eeeeeeee.....eeeeeeee...eeeeee..eeee.......hhhhhhhhhhhhh...........hhhhhhhhhh...ee....eeeeeeee.......hhhhhhh..eee............hhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..eee.....eee.....eeeeeee....ee.........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------MULTIHEME_CYTC  PDB: A:9-91 UniProt: 9-91                                          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jrz A   1 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560

Chain B from PDB  Type:PROTEIN  Length:568
 aligned with FRDA_SHEFN | Q07WU7 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:568
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585        
           FRDA_SHEFN    26 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 593
               SCOP domains d1jrzb1 B:1-102 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain                d1jrzb2 B:103-359,B:506-568 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1jrzb3 B:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1jrzb2 B:103-359,B:506-568                                     SCOP domains
               CATH domains 1jrzB02 B:1-99 Flavocytochrome C3; Chain A                                                         ---1jrzB03 B:103-359,B:506-568  [code=3.50.50.60, no name defined]                                                                                                                                                                                                  -----1jrzB01 B:365-502 Flavocytochrome C3; Chain A, domain 1                                                                                   ---1jrzB03 B:103-359,B:506-568  [code=3.50.50.60, no name defined] CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhh..................hhhhh........hhhhhh....................hhhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhh...eeee........hhhhh...ee...hhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eee.........eee.....hhhhhhhhhhhhhhhhh..eee..eeeeeeee.....eeeeeeee...eeeeeeeeeeee.......hhhhhhhhhhhhh...........hhhhhhhhhh...ee....eeeeeeee.......hhhhhhh..eee............hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhh...ee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..eee.....eee.....eeeeeee....ee.........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------MULTIHEME_CYTC  PDB: B:9-91 UniProt: 34-116                                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jrz B   1 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560

Chain B from PDB  Type:PROTEIN  Length:568
 aligned with FRDA_SHEFR | P0C278 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:568
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560        
           FRDA_SHEFR     1 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLEEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWQRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568
               SCOP domains d1jrzb1 B:1-102 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain                d1jrzb2 B:103-359,B:506-568 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1jrzb3 B:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1jrzb2 B:103-359,B:506-568                                     SCOP domains
               CATH domains 1jrzB02 B:1-99 Flavocytochrome C3; Chain A                                                         ---1jrzB03 B:103-359,B:506-568  [code=3.50.50.60, no name defined]                                                                                                                                                                                                  -----1jrzB01 B:365-502 Flavocytochrome C3; Chain A, domain 1                                                                                   ---1jrzB03 B:103-359,B:506-568  [code=3.50.50.60, no name defined] CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhhh..................hhhhh........hhhhhh....................hhhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhh...eeee........hhhhh...ee...hhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eee.........eee.....hhhhhhhhhhhhhhhhh..eee..eeeeeeee.....eeeeeeee...eeeeeeeeeeee.......hhhhhhhhhhhhh...........hhhhhhhhhh...ee....eeeeeeee.......hhhhhhh..eee............hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhh...ee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..eee.....eee.....eeeeeee....ee.........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------MULTIHEME_CYTC  PDB: B:9-91 UniProt: 9-91                                          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jrz B   1 ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1JRZ)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FRDA_SHEFR | P0C278)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0000104	succinate dehydrogenase activity	Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor.
biological process
	GO:0019645	anaerobic electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors other than oxygen to generate a transmembrane electrochemical gradient.
	GO:0009061	anaerobic respiration	The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which uses compounds other than oxygen (e.g. nitrate, sulfate) as the terminal electron acceptor.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A,B (FRDA_SHEFN | Q07WU7)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0000104	succinate dehydrogenase activity	Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	1jrz
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	FRDA_SHEFR \| P0C278
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	1.3.99.1
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1jrx	R402A MUTANT OF THE SAME ENZYME
1jry	R402K MUTANT OF THE SAME ENZYME

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 6)

CATH Domains (3, 6)

Pfam Domains (0, 0)

Gene Ontology (9, 14)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File