Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF UROPORPHYRINOGEN III SYNTHASE
 
Authors :  M. A. Mathews, H. L. Schubert, F. G. Whitby, K. J. Alexander, K. Schadick, H. A. Bergonia, J. D. Phillips, C. P. Hill
Date :  10 Aug 01  (Deposition) - 07 Nov 01  (Release) - 17 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Heme Biosynthesis, Heam Biosynthesis, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Mathews, H. L. Schubert, F. G. Whitby, K. J. Alexander, K. Schadick, H. A. Bergonia, J. D. Phillips, C. P. Hill
Crystal Structure Of Human Uroporphyrinogen Iii Synthase.
Embo J. V. 20 5832 2001
PubMed-ID: 11689424  |  Reference-DOI: 10.1093/EMBOJ/20.21.5832
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UROPORPHYRINOGEN-III SYNTHASE
    ChainsA, B
    EC Number4.2.1.75
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET14B
    Expression System StrainBL21(DE3)CODON+
    Expression System Taxid562
    GeneUROS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymURO'GEN III SYNTHASE, UROS, UROPORPHYRINOGEN-III COSYNTHETASE, HYDROXYMETHYLBILANE HYDROLYASE [CYCLIZING], UROIIIS

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1JR2)

(-) Sites  (0, 0)

(no "Site" information available for 1JR2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JR2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JR2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (23, 46)

Asymmetric Unit (23, 46)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_021615V3FHEM4_HUMANDisease (CEP)773301339A/BV3F
02UniProtVAR_003674L4FHEM4_HUMANDisease (CEP)121908015A/BL4F
03UniProtVAR_003675Y19CHEM4_HUMANDisease (CEP)  ---A/BY19C
04UniProtVAR_021616S47PHEM4_HUMANDisease (CEP)397515527A/BS47P
05UniProtVAR_003676P53LHEM4_HUMANDisease (CEP)121908013A/BP53L
06UniProtVAR_003677T62AHEM4_HUMANDisease (CEP)28941775A/BT62A
07UniProtVAR_003678A66VHEM4_HUMANDisease (CEP)28941774A/BA66V
08UniProtVAR_021617A69THEM4_HUMANDisease (CEP)  ---A/BA69T
09UniProtVAR_003679C73RHEM4_HUMANDisease (CEP)121908012A/BC73R
10UniProtVAR_003680V82FHEM4_HUMANDisease (CEP)121908016A/BV82F
11UniProtVAR_003681V99AHEM4_HUMANDisease (CEP)  ---A/BV99A
12UniProtVAR_003682A104VHEM4_HUMANDisease (CEP)397515528A/BA104V
13UniProtVAR_049345K124RHEM4_HUMANPolymorphism17153561A/BK124R
14UniProtVAR_021618I129THEM4_HUMANDisease (CEP)  ---A/BI129T
15UniProtVAR_049346V171GHEM4_HUMANPolymorphism17173752A/BV171G
16UniProtVAR_013558G188RHEM4_HUMANDisease (CEP)121908017A/BG188R
17UniProtVAR_021619G188WHEM4_HUMANDisease (CEP)121908017A/BG188W
18UniProtVAR_003683S212PHEM4_HUMANDisease (CEP)139388833A/BS212P
19UniProtVAR_021621I219SHEM4_HUMANDisease (CEP)767029901A/BI219S
20UniProtVAR_003684G225SHEM4_HUMANDisease (CEP)121908020A/BG225S
21UniProtVAR_003685T228MHEM4_HUMANDisease (CEP)121908014A/BT228M
22UniProtVAR_067318L237PHEM4_HUMANDisease (CEP)777433697A/BL237P
23UniProtVAR_066247P248QHEM4_HUMANDisease (CEP)121908021A/BP248Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (23, 23)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_021615V3FHEM4_HUMANDisease (CEP)773301339AV3F
02UniProtVAR_003674L4FHEM4_HUMANDisease (CEP)121908015AL4F
03UniProtVAR_003675Y19CHEM4_HUMANDisease (CEP)  ---AY19C
04UniProtVAR_021616S47PHEM4_HUMANDisease (CEP)397515527AS47P
05UniProtVAR_003676P53LHEM4_HUMANDisease (CEP)121908013AP53L
06UniProtVAR_003677T62AHEM4_HUMANDisease (CEP)28941775AT62A
07UniProtVAR_003678A66VHEM4_HUMANDisease (CEP)28941774AA66V
08UniProtVAR_021617A69THEM4_HUMANDisease (CEP)  ---AA69T
09UniProtVAR_003679C73RHEM4_HUMANDisease (CEP)121908012AC73R
10UniProtVAR_003680V82FHEM4_HUMANDisease (CEP)121908016AV82F
11UniProtVAR_003681V99AHEM4_HUMANDisease (CEP)  ---AV99A
12UniProtVAR_003682A104VHEM4_HUMANDisease (CEP)397515528AA104V
13UniProtVAR_049345K124RHEM4_HUMANPolymorphism17153561AK124R
14UniProtVAR_021618I129THEM4_HUMANDisease (CEP)  ---AI129T
15UniProtVAR_049346V171GHEM4_HUMANPolymorphism17173752AV171G
16UniProtVAR_013558G188RHEM4_HUMANDisease (CEP)121908017AG188R
17UniProtVAR_021619G188WHEM4_HUMANDisease (CEP)121908017AG188W
18UniProtVAR_003683S212PHEM4_HUMANDisease (CEP)139388833AS212P
19UniProtVAR_021621I219SHEM4_HUMANDisease (CEP)767029901AI219S
20UniProtVAR_003684G225SHEM4_HUMANDisease (CEP)121908020AG225S
21UniProtVAR_003685T228MHEM4_HUMANDisease (CEP)121908014AT228M
22UniProtVAR_067318L237PHEM4_HUMANDisease (CEP)777433697AL237P
23UniProtVAR_066247P248QHEM4_HUMANDisease (CEP)121908021AP248Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (23, 23)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_021615V3FHEM4_HUMANDisease (CEP)773301339BV3F
02UniProtVAR_003674L4FHEM4_HUMANDisease (CEP)121908015BL4F
03UniProtVAR_003675Y19CHEM4_HUMANDisease (CEP)  ---BY19C
04UniProtVAR_021616S47PHEM4_HUMANDisease (CEP)397515527BS47P
05UniProtVAR_003676P53LHEM4_HUMANDisease (CEP)121908013BP53L
06UniProtVAR_003677T62AHEM4_HUMANDisease (CEP)28941775BT62A
07UniProtVAR_003678A66VHEM4_HUMANDisease (CEP)28941774BA66V
08UniProtVAR_021617A69THEM4_HUMANDisease (CEP)  ---BA69T
09UniProtVAR_003679C73RHEM4_HUMANDisease (CEP)121908012BC73R
10UniProtVAR_003680V82FHEM4_HUMANDisease (CEP)121908016BV82F
11UniProtVAR_003681V99AHEM4_HUMANDisease (CEP)  ---BV99A
12UniProtVAR_003682A104VHEM4_HUMANDisease (CEP)397515528BA104V
13UniProtVAR_049345K124RHEM4_HUMANPolymorphism17153561BK124R
14UniProtVAR_021618I129THEM4_HUMANDisease (CEP)  ---BI129T
15UniProtVAR_049346V171GHEM4_HUMANPolymorphism17173752BV171G
16UniProtVAR_013558G188RHEM4_HUMANDisease (CEP)121908017BG188R
17UniProtVAR_021619G188WHEM4_HUMANDisease (CEP)121908017BG188W
18UniProtVAR_003683S212PHEM4_HUMANDisease (CEP)139388833BS212P
19UniProtVAR_021621I219SHEM4_HUMANDisease (CEP)767029901BI219S
20UniProtVAR_003684G225SHEM4_HUMANDisease (CEP)121908020BG225S
21UniProtVAR_003685T228MHEM4_HUMANDisease (CEP)121908014BT228M
22UniProtVAR_067318L237PHEM4_HUMANDisease (CEP)777433697BL237P
23UniProtVAR_066247P248QHEM4_HUMANDisease (CEP)121908021BP248Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JR2)

(-) Exons   (9, 18)

Asymmetric Unit (9, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003687971bENSE00001432041chr10:127511796-127511598199HEM4_HUMAN-00--
1.2bENST000003687972bENSE00001372447chr10:127505094-12750500689HEM4_HUMAN1-21212A:1-21
B:1-21
21
21
1.3aENST000003687973aENSE00001384033chr10:127504829-12750474684HEM4_HUMAN22-49282A:22-49
B:22-49
28
28
1.4ENST000003687974ENSE00001382769chr10:127503699-12750360397HEM4_HUMAN50-82332A:50-82
B:50-82
33
33
1.5ENST000003687975ENSE00001372809chr10:127500857-12750078375HEM4_HUMAN82-107262A:82-107
B:82-107
26
26
1.6aENST000003687976aENSE00001382753chr10:127496056-12749598275HEM4_HUMAN107-132262A:107-132
B:107-132
26
26
1.8aENST000003687978aENSE00001381661chr10:127486714-12748663481HEM4_HUMAN132-159282A:132-159
B:132-159
28
28
1.11bENST0000036879711bENSE00001370810chr10:127484757-12748467286HEM4_HUMAN159-187292A:159-187
B:159-187
29
29
1.12cENST0000036879712cENSE00001371056chr10:127483547-12748344999HEM4_HUMAN188-220332A:188-220
B:188-220
33
33
1.16gENST0000036879716gENSE00001865283chr10:127477574-127477147428HEM4_HUMAN221-265452A:221-260
B:221-260
40
40

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with HEM4_HUMAN | P10746 from UniProtKB/Swiss-Prot  Length:265

    Alignment length:260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
           HEM4_HUMAN     1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQ 260
               SCOP domains d1jr2a_ A: Uroporphyrinogen III synthase (U3S, HemD)                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jr2A01 A:1-35,A:176-260           1jr2A02 A:36-175  [code=3.40.50.10090, no name defined]                                                                                     1jr2A01 A:1-35,A:176-260  [code=3.40.50.10090, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhhhhhh...eeeeee.eeeee.hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhheeee.hhhhhhhhhhh..........hhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh....eeeee.eeeee..hhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhheeee.hhhhhhhhhhh.....ee....hhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --FF--------------C---------------------------P-----L--------A---V--T---R--------F----------------A----V-------------------R----T-----------------------------------------G----------------R-----------------------P------S-----S--M--------P----------Q------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: A:1-2Exon 1.3a  PDB: A:22-49     Exon 1.4  PDB: A:50-82           ------------------------Exon 1.6a  PDB: A:107-132 --------------------------Exon 1.11b  PDB: A:159-187   Exon 1.12c  PDB: A:188-220       Exon 1.16g  PDB: A:221-260 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------Exon 1.5  PDB: A:82-107   ------------------------Exon 1.8a  PDB: A:132-159   ----------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1jr2 A   1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQ 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain B from PDB  Type:PROTEIN  Length:260
 aligned with HEM4_HUMAN | P10746 from UniProtKB/Swiss-Prot  Length:265

    Alignment length:260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
           HEM4_HUMAN     1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQ 260
               SCOP domains d1jr2b_ B: Uroporphyrinogen III synthase (U3S, HemD)                                                                                                                                                                                                                 SCOP domains
               CATH domains 1jr2B01 B:1-35,B:176-260           1jr2B02 B:36-175  [code=3.40.50.10090, no name defined]                                                                                     1jr2B01 B:1-35,B:176-260  [code=3.40.50.10090, no name defined]                       CATH domains
           Pfam domains (1) ----------------HEM4-1jr2B01 B:17-253                                                                                                                                                                                                                        ------- Pfam domains (1)
           Pfam domains (2) ----------------HEM4-1jr2B02 B:17-253                                                                                                                                                                                                                        ------- Pfam domains (2)
         Sec.struct. author .eeee...........hhhhhhhhh...eeee...eeeee.hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh..........hhhhhhhhhhh.......eeeee.hhhhhhhhhhhhhh...eeeee.eeeee..hhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhheeee.hhhhhhhhhhh.....ee....hhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --FF--------------C---------------------------P-----L--------A---V--T---R--------F----------------A----V-------------------R----T-----------------------------------------G----------------R-----------------------P------S-----S--M--------P----------Q------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: B:1-2Exon 1.3a  PDB: B:22-49     Exon 1.4  PDB: B:50-82           ------------------------Exon 1.6a  PDB: B:107-132 --------------------------Exon 1.11b  PDB: B:159-187   Exon 1.12c  PDB: B:188-220       Exon 1.16g  PDB: B:221-260 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------Exon 1.5  PDB: B:82-107   ------------------------Exon 1.8a  PDB: B:132-159   ----------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1jr2 B   1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQ 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (HEM4_HUMAN | P10746)
molecular function
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004852    uroporphyrinogen-III synthase activity    Catalysis of the reaction: hydroxymethylbilane = H(2)O + uroporphyrinogen III.
biological process
    GO:0071418    cellular response to amine stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups.
    GO:0071243    cellular response to arsenic-containing substance    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
    GO:0006783    heme biosynthetic process    The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
    GO:0006779    porphyrin-containing compound biosynthetic process    The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
    GO:0006782    protoporphyrinogen IX biosynthetic process    The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0033014    tetrapyrrole biosynthetic process    The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
    GO:0006780    uroporphyrinogen III biosynthetic process    The chemical reactions and pathways resulting in the formation of uroporphyrinogen III.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1jr2)
 
  Sites
(no "Sites" information available for 1jr2)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1jr2)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1jr2
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  HEM4_HUMAN | P10746
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.2.1.75
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  263700
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  HEM4_HUMAN | P10746
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1JR2)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1JR2)