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(-) Description

Title :  CRYSTAL STRUCTURE OF DSBD-ALPHA; THE N-TERMINAL DOMAIN OF DSBD
 
Authors :  P. W. Haebel, D. Goldstone, P. Metcalf
Date :  02 Aug 01  (Deposition) - 25 Sep 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Redox-Active Center, Electron Transport, Inner Membrane, Disulfide Bond Formation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. W. Haebel, D. Goldstone, F. Katzen, J. Beckwith, P. Metcalf
The Disulfide Bond Isomerase Dsbc Is Activated By An Immunoglobulin-Fold Thiol Oxidoreductase: Crystal Structure Of The Dsbc-Dsbd Alpha Complex.
Embo J. V. 21 4774 2002
PubMed-ID: 12234918  |  Reference-DOI: 10.1093/EMBOJ/CDF489
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DSBD-ALPHA
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Cell LineDH5ALPHA (Z1) CELLS
    Expression System PlasmidPFK115
    Expression System Taxid562
    FragmentDSBD-ALPHA
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1JPE)

(-) Sites  (0, 0)

(no "Site" information available for 1JPE)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:103 -A:109

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JPE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JPE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JPE)

(-) Exons   (0, 0)

(no "Exon" information available for 1JPE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with DSBD_ECOLI | P36655 from UniProtKB/Swiss-Prot  Length:565

    Alignment length:116
                                    38        48        58        68        78        88        98       108       118       128       138      
           DSBD_ECOLI    29 QFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVAN 144
               SCOP domains d1jpea_ A: Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)                                  SCOP domains
               CATH domains 1jpeA00 A:10-125  [code=2.60.40.1250, no name defined]                                                               CATH domains
               Pfam domains DsbC-1jpeA01 A:10-121                                                                                           ---- Pfam domains
         Sec.struct. author ...hhhhheeeeeeee..eeeeeeee...eeee.hhheeeeeeeee........eeeee...eeeeee..eeeeeeeeeeeeeeeeeeeee.eee...ee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1jpe A  10 QFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVAN 125
                                    19        29        39        49        59        69        79        89        99       109       119      

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (DSBD_ECOLI | P36655)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0015035    protein disulfide oxidoreductase activity    Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
    GO:0047134    protein-disulfide reductase activity    Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+.
    GO:0022865    transmembrane electron transfer carrier    Enables electron flow across a biological membrane, from donors localized on one side of the membrane to acceptors localized on the other side. These systems contribute to or subtract from the membrane potential, depending on the direction of electron flow. They are therefore important to cellular energetics.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0071502    cellular response to temperature stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
    GO:0017004    cytochrome complex assembly    The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
    GO:0009898    cytoplasmic side of plasma membrane    The leaflet the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DSBD_ECOLI | P366551jzd 1l6p 1vrs 1z5y 2fwe 2fwf 2fwg 2fwh 3pfu 4ip1 4ip6

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