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(-) Description

Title :  STRUCTURE OF HI0074 FROM HEAMOPHILUS INFLUENZAE REVEALS THE FOLD OF A SUBSTRATE BINDING DOMAIN OF A NUCLEOTIDYLTRANSFERASE
 
Authors :  C. Lehmann, K. Lim, O. Herzberg, Structure 2 Function Project (S2F)
Date :  29 Jul 01  (Deposition) - 18 Dec 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Hi0074, Structural Genomics, Hypothetical Protein, , Structure 2 Function Project, S2F, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Lehmann, K. Lim, V. R. Chalamasetty, W. Krajewski, E. Melamud, A. Galkin, A. Howard, Z. Kelman, P. T. Reddy, A. G. Murzin, O. Herzberg
The Hi0073/Hi0074 Protein Pair From Haemophilus Influenzae Is A Member Of A New Nucleotidyltransferase Family: Structure, Sequence Analyses, And Solution Studies
Proteins V. 50 249 2003
PubMed-ID: 12486719  |  Reference-DOI: 10.1002/PROT.10260
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN HI0074
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRE1
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HI0074
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1JOG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JOG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JOG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JOG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JOG)

(-) Exons   (0, 0)

(no "Exon" information available for 1JOG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
 aligned with Y074_HAEIN | P43934 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:135
                                    16        26        36        46        56        66        76        86        96       106       116       126       136     
           Y074_HAEIN     7 NLNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNITSHTYDQEKAMAVYAQIDDFLIESSFLLEQLRQ 141
               SCOP domains d1joga_ A: Hypothetical protein HI0074                                                                                                  SCOP domains
               CATH domains 1jogA00 A:7-141 Nucleotidyltransferases  domain 2                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jog A   7 NLNVLDAAFYSLEQTVVQISDRNWFDmQPSIVQDTLIAGAIQKFEFVYELSLKmmKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDmSKWVAYRDmRNITSHTYDQEKAmAVYAQIDDFLIESSFLLEQLRQ 141
                                    16        26      | 36        46        56   ||   66        76        86        96       106       116  |    126       136     
                                                     33-MSE                     60-MSE                              96-MSE  105-MSE       119-MSE                  
                                                                                 61-MSE                                                                            


Chain B from PDB  Type:PROTEIN  Length:135
 aligned with Y074_HAEIN | P43934 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:135
                                    16        26        36        46        56        66        76        86        96       106       116       126       136     
           Y074_HAEIN     7 NLNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNITSHTYDQEKAMAVYAQIDDFLIESSFLLEQLRQ 141
               SCOP domains d1jogb_ B: Hypothetical protein HI0074                                                                                                  SCOP domains
               CATH domains 1jogB00 B:7-141 Nucleotidyltransferases  domain 2                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jog B   7 NLNVLDAAFYSLEQTVVQISDRNWFDmQPSIVQDTLIAGAIQKFEFVYELSLKmmKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDmSKWVAYRDmRNITSHTYDQEKAmAVYAQIDDFLIESSFLLEQLRQ 141
                                    16        26      | 36        46        56   ||   66        76        86        96       106       116  |    126       136     
                                                     33-MSE                     60-MSE                              96-MSE  105-MSE       119-MSE                  
                                                                                 61-MSE                                                                            


Chain C from PDB  Type:PROTEIN  Length:135
 aligned with Y074_HAEIN | P43934 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:135
                                    16        26        36        46        56        66        76        86        96       106       116       126       136     
           Y074_HAEIN     7 NLNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNITSHTYDQEKAMAVYAQIDDFLIESSFLLEQLRQ 141
               SCOP domains d1jogc_ C: Hypothetical protein HI0074                                                                                                  SCOP domains
               CATH domains 1jogC00 C:7-141 Nucleotidyltransferases  domain 2                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jog C   7 NLNVLDAAFYSLEQTVVQISDRNWFDmQPSIVQDTLIAGAIQKFEFVYELSLKmmKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDmSKWVAYRDmRNITSHTYDQEKAmAVYAQIDDFLIESSFLLEQLRQ 141
                                    16        26      | 36        46        56   ||   66        76        86        96       106       116  |    126       136     
                                                     33-MSE                     60-MSE                              96-MSE  105-MSE       119-MSE                  
                                                                                 61-MSE                                                                            


Chain D from PDB  Type:PROTEIN  Length:136
 aligned with Y074_HAEIN | P43934 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:136
                                    16        26        36        46        56        66        76        86        96       106       116       126       136      
           Y074_HAEIN     7 NLNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNITSHTYDQEKAMAVYAQIDDFLIESSFLLEQLRQR 142
               SCOP domains d1jogd_ D: Hypothetical protein HI0074                                                                                                   SCOP domains
               CATH domains 1jogD00 D:7-142 Nucleotidyltransferases  domain 2                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jog D   7 NLNVLDAAFYSLEQTVVQISDRNWFDmQPSIVQDTLIAGAIQKFEFVYELSLKmmKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDmSKWVAYRDmRNITSHTYDQEKAmAVYAQIDDFLIESSFLLEQLRQR 142
                                    16        26      | 36        46        56   ||   66        76        86        96       106       116  |    126       136      
                                                     33-MSE                     60-MSE                              96-MSE  105-MSE       119-MSE                   
                                                                                 61-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JOG)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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