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(-) Description

Title :  STRUCTURE OF HI1333, A HYPOTHETICAL PROTEIN FROM HAEMOPHILUS INFLUENZAE WITH STRUCTURAL SIMILARITY TO RNA-BINDING PROTEINS
 
Authors :  M. A. Willis, W. Krajewski, V. R. Chalamasetty, P. Reddy, A. Howard, O. H Structure 2 Function Project (S2F)
Date :  26 Jul 01  (Deposition) - 20 Nov 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.37
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hypothetical Protein, Structural Genomics, Hi1333, Yhby_haein, Structure 2 Function Project, S2F, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Willis, W. Krajewski, V. R. Chalamasetty, P. Reddy, A. Howard, O. Herzberg
Structure Of Hi1333 (Yhby), A Putative Rna-Binding Protein From Haemophilus Influenzae
Proteins V. 49 423 2002
PubMed-ID: 12360533  |  Reference-DOI: 10.1002/PROT.10225

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN HI1333
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRE1
    Expression System Strain: MZ1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HI1333
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:95 , GOL A:101 , ASN B:20 , PRO B:21 , HOH B:133 , HOH B:222BINDING SITE FOR RESIDUE GOL B 1
2AC2SOFTWAREGOL A:100 , HOH A:203 , GLN B:95 , HOH B:172BINDING SITE FOR RESIDUE GOL B 100
3AC3SOFTWAREPRO A:21 , LYS A:49 , LYS A:51 , HIS A:81 , ILE A:82 , HOH A:203 , GOL B:100BINDING SITE FOR RESIDUE GOL A 100
4AC4SOFTWAREGLN A:95 , HOH A:130 , HOH A:240 , GOL B:1 , HOH B:119BINDING SITE FOR RESIDUE GOL A 101
5AC5SOFTWAREHIS A:45 , ILE A:94 , HOH A:181 , LEU B:15BINDING SITE FOR RESIDUE GOL A 102
6AC6SOFTWAREASN A:65 , VAL A:68 , GLN A:75 , HOH A:176BINDING SITE FOR RESIDUE GOL A 103
7AC7SOFTWAREGLN B:10 , GLU B:39 , GLU B:70 , ARG B:87 , HOH B:129 , HOH B:196BINDING SITE FOR RESIDUE GOL B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JO0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JO0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JO0)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CRMPS51295 CRM domain profile.Y1333_HAEIN2-98
 		  2A:2-98
B:2-97
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CRMPS51295 CRM domain profile.Y1333_HAEIN2-98
 		  1A:2-98
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CRMPS51295 CRM domain profile.Y1333_HAEIN2-98
 		  1-
B:2-97

(-) Exons   (0, 0)

(no "Exon" information available for 1JO0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:97
 aligned with Y1333_HAEIN | P71376 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:97
                                    11        21        31        41        51        61        71        81        91       
           Y1333_HAEIN    2 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPSEEAKIQLPR 98
               SCOP domains d1jo0a_ A: YhbY homologue HI1333                                                                  SCOP domains
               CATH domains 1jo0A00 A:2-98 YhbY-like                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.....eee.....hhhhhhhhhhhhhhhheeeeee...hhhhhhhhhhhhhhhhh.eeeeee..eeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CRM  PDB: A:2-98 UniProt: 2-98                                                                    PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  1jo0 A  2 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPSEEAKIQLPR 98
                                    11        21        31        41        51        61        71        81        91       


Chain B from PDB  Type:PROTEIN  Length:96
 aligned with Y1333_HAEIN | P71376 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:96
                                    11        21        31        41        51        61        71        81        91      
           Y1333_HAEIN    2 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPSEEAKIQLP 97
               SCOP domains d1jo0b_ B: YhbY homologue HI1333                                                                 SCOP domains
               CATH domains 1jo0B00 B:2-97 YhbY-like                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.....eee.....hhhhhhhhhhhhhhhheeeeee...hhhhhhhhhhhhhhhhh.eeeeee..eeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE CRM  PDB: B:2-97 UniProt: 2-98                                                                   PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  1jo0 B  2 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPSEEAKIQLP 97
                                    11        21        31        41        51        61        71        81        91
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JO0)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Y1333_HAEIN | P71376)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

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