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(-) Description

Title :  CRYSTAL STRUCTURE OF THE REOVIRUS MU1/SIGMA3 COMPLEX
 
Authors :  S. Liemann, M. L. Nibert, S. C. Harrison
Date :  20 Jul 01  (Deposition) - 06 Feb 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I
Keywords :  Protein-Protein Complex, Jelly Roll, Zinc Finger, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Liemann, K. Chandran, T. S. Baker, M. L. Nibert, S. C. Harrison
Structure Of The Reovirus Membrane-Penetration Protein, Mu1, In A Complex With Is Protector Protein, Sigma3.
Cell(Cambridge, Mass. ) V. 108 283 2002
PubMed-ID: 11832217  |  Reference-DOI: 10.1016/S0092-8674(02)00612-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN MU-1
    Chains: A, C, E
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC-DUAL
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: N-TERMINUS (RESIDUES 2-42)
    Gene: M2
    Organism Scientific: REOVIRUS SP.
    Organism Taxid: 10891
 
Molecule 2 - PROTEIN MU-1
    Chains: B, D, F
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC-DUAL
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: C-TERMINUS (RESIDUES 43-708)
    Gene: M2
    Organism Scientific: REOVIRUS SP.
    Organism Taxid: 10891
 
Molecule 3 - SIGMA 3 PROTEIN
    Chains: G, H, I
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC-DUAL
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: S4
    Mutation: YES
    Organism Scientific: REOVIRUS SP.
    Organism Taxid: 10891
    Synonym: MAJOR OUTER CAPSID PROTEIN

 Structural Features

(-) Chains, Units

  123456789
Asymmetric/Biological Unit : ABCDEFGHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 19)

Asymmetric/Biological Unit (5, 19)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2BOG3Ligand/IonB-OCTYLGLUCOSIDE
3CL1Ligand/IonCHLORIDE ION
4SO49Ligand/IonSULFATE ION
5ZN3Ligand/IonZINC ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:13 , ASP B:220 , ARG B:230 , ALA B:236 , ALA B:237 , LEU B:240 , TRP B:249BINDING SITE FOR RESIDUE BOG B 709
02AC2SOFTWAREVAL C:13 , ASP D:220 , ARG D:230 , ALA D:236 , ALA D:237 , LEU D:240 , TRP D:249BINDING SITE FOR RESIDUE BOG D 709
03AC3SOFTWAREVAL E:13 , ASP F:220 , ARG F:230 , ALA F:236 , ALA F:237 , LEU F:240 , TRP F:249BINDING SITE FOR RESIDUE BOG F 709
04AC4SOFTWARECYS I:51 , CYS I:54 , HIS I:71 , CYS I:73BINDING SITE FOR RESIDUE ZN I 701
05AC5SOFTWARECYS G:51 , CYS G:54 , HIS G:71 , CYS G:73BINDING SITE FOR RESIDUE ZN G 702
06AC6SOFTWARECYS H:51 , CYS H:54 , HIS H:71 , CYS H:73BINDING SITE FOR RESIDUE ZN H 703
07AC7SOFTWARELYS B:339 , THR B:340 , MET B:341 , GLY B:342 , THR B:343 , GLY B:363BINDING SITE FOR RESIDUE SO4 B 710
08AC8SOFTWARELYS D:339 , THR D:340 , MET D:341 , GLY D:342 , THR D:343 , GLY D:363BINDING SITE FOR RESIDUE SO4 D 710
09AC9SOFTWARELYS F:339 , THR F:340 , MET F:341 , GLY F:342 , THR F:343 , GLY F:363BINDING SITE FOR RESIDUE SO4 F 710
10BC1SOFTWAREGLN G:39 , ARG G:78 , HIS G:79 , HOH G:721BINDING SITE FOR RESIDUE SO4 G 504
11BC2SOFTWAREARG H:78 , HIS H:79 , HOH H:706BINDING SITE FOR RESIDUE SO4 H 505
12BC3SOFTWAREGLN I:39 , ARG I:78 , HIS I:79BINDING SITE FOR RESIDUE SO4 I 506
13BC4SOFTWAREARG G:312 , GLY G:318BINDING SITE FOR RESIDUE SO4 G 507
14BC5SOFTWAREHOH D:747 , ARG H:312 , GLY H:318BINDING SITE FOR RESIDUE SO4 H 508
15BC6SOFTWAREHOH F:718 , ARG I:312 , GLY I:318BINDING SITE FOR RESIDUE SO4 I 509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JMU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JMU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JMU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JMU)

(-) Exons   (0, 0)

(no "Exon" information available for 1JMU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:33
 aligned with MU1_REOVL | P11077 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:33
                                    19        29        39   
            MU1_REOVL    10 TINVTGDGNVFKPSAETSSTAVPSLSLSPGMLN  42
               SCOP domains d1jmu.1 A:,B:                     SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .........ee...hhhh.........hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 1jmu A  10 TINVTGDGNVFKPSAETSSTAVPSLSLSPGMLN  42
                                    19        29        39   


Chain B from PDB  Type:PROTEIN  Length:608
 aligned with MU1_REOVL | P11077 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:633
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672   
            MU1_REOVL    43 PGGVPWIAIGDETSVTSPGALRRMTSKDIPETAIINTDNSSGAVPSESALVPYNDEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTPFQIQVTDNTGTNWHLNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP 675
               SCOP domains d1jmu.1 A:,B: Membrane penetr                         ation protein mu1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1jmuB01 B:43-187 Protein mu-1                         , chain B, domain 1                                                                        1jmuB02 B:188-277,B:642-675 Protein mu-1, chain B, domain 2                               1jmuB03 B:278-306,B:514-641  1jmuB04 B:307-513 Membrane penetration protein mu1, Chain B, domain 4                                                                                                                                          1jmuB03 B:278-306,B:514-641 Protein mu-1, chain B, domain 3                                                                     1jmuB02 B:188-277,B:642-675        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee........hhh.eee..hhhh-------------------------....ee.hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhheeeeeeee.hhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..ee..............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhh.....eee............eee.......eeeeeeee....eeeeeee...eeee......eeeeee................eeeeeeeee..hhhhh.hhhhh..eeeeeeee..eee......eee....eeeeehhhhhh......eeeeeeeee..................eeeeee.....eee..eee.eehhhhhh...hhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jmu B  43 PGGVPWIAIGDETSVTSPGALRRMTSKDI-------------------------DEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP 675
                                    52        62        |-         -         -    |  102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672   
                                                       71                        97                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:33
 aligned with MU1_REOVL | P11077 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:33
                                    19        29        39   
            MU1_REOVL    10 TINVTGDGNVFKPSAETSSTAVPSLSLSPGMLN  42
               SCOP domains d1jmu.2 C:,D:                     SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .........ee...hhhh.........hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 1jmu C  10 TINVTGDGNVFKPSAETSSTAVPSLSLSPGMLN  42
                                    19        29        39   


Chain D from PDB  Type:PROTEIN  Length:608
 aligned with MU1_REOVL | P11077 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:633
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672   
            MU1_REOVL    43 PGGVPWIAIGDETSVTSPGALRRMTSKDIPETAIINTDNSSGAVPSESALVPYNDEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTPFQIQVTDNTGTNWHLNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP 675
               SCOP domains d1jmu.2 C:,D: Membrane penetr                         ation protein mu1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1jmuD01 D:43-187 Protein mu-1                         , chain B, domain 1                                                                        1jmuD02 D:188-277,D:642-675 Protein mu-1, chain B, domain 2                               1jmuD03 D:278-306,D:514-641  1jmuD04 D:307-513 Membrane penetration protein mu1, Chain B, domain 4                                                                                                                                          1jmuD03 D:278-306,D:514-641 Protein mu-1, chain B, domain 3                                                                     1jmuD02 D:188-277,D:642-675        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee........hhh.eee..hhhh-------------------------....ee.hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhheeeeeeee.hhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....ee..............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhh.....eee............eee.......eeeeeeee....eeeeeee...eeee......eeeeee................eeeeeeeee..hhhhh.hhhhh..eeeeeeee..eee......eee....eeeeehhhhhh......eeeeeeeee..................eeeeee.....eee..eee.eehhhhhh...hhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jmu D  43 PGGVPWIAIGDETSVTSPGALRRMTSKDI-------------------------DEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP 675
                                    52        62        |-         -         -    |  102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672   
                                                       71                        97                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:33
 aligned with MU1_REOVL | P11077 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:33
                                    19        29        39   
            MU1_REOVL    10 TINVTGDGNVFKPSAETSSTAVPSLSLSPGMLN  42
               SCOP domains d1jmu.3 E:,F:                     SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .........ee...hhhh.........hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 1jmu E  10 TINVTGDGNVFKPSAETSSTAVPSLSLSPGMLN  42
                                    19        29        39   


Chain F from PDB  Type:PROTEIN  Length:608
 aligned with MU1_REOVL | P11077 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:633
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672   
            MU1_REOVL    43 PGGVPWIAIGDETSVTSPGALRRMTSKDIPETAIINTDNSSGAVPSESALVPYNDEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTPFQIQVTDNTGTNWHLNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP 675
               SCOP domains d1jmu.3 E:,F: Membrane penetr                         ation protein mu1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1jmuF01 F:43-187 Protein mu-1                         , chain B, domain 1                                                                        1jmuF02 F:188-277,F:642-675 Protein mu-1, chain B, domain 2                               1jmuF03 F:278-306,F:514-641  1jmuF04 F:307-513 Membrane penetration protein mu1, Chain B, domain 4                                                                                                                                          1jmuF03 F:278-306,F:514-641 Protein mu-1, chain B, domain 3                                                                     1jmuF02 F:188-277,F:642-675        CATH domains
           Pfam domains (1) Reovirus_M2-1jmuF01 F:43-675                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (1)
           Pfam domains (2) Reovirus_M2-1jmuF02 F:43-675                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (2)
           Pfam domains (3) Reovirus_M2-1jmuF03 F:43-675                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (3)
           Pfam domains (4) Reovirus_M2-1jmuF04 F:43-675                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (4)
           Pfam domains (5) Reovirus_M2-1jmuF05 F:43-675                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (5)
           Pfam domains (6) Reovirus_M2-1jmuF06 F:43-675                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (6)
         Sec.struct. author ...eeeee........hhh.eee..hhhh-------------------------....ee.hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhheeeeeeee.hhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....ee..............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhh.....eee............eee.......eeeeeee.....eeeeeee...eeee......eeeeee................eeeeeeeee..hhhhh.hhhhh..eeeeeeee..eee......eee....eeeeehhhhhh......eeeeeeeee..................eeeeee.....eee..eee.eehhhhhh...hhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jmu F  43 PGGVPWIAIGDETSVTSPGALRRMTSKDI-------------------------DEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP 675
                                    52        62        |-         -         -    |  102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672   
                                                       71                        97                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain G from PDB  Type:PROTEIN  Length:366
 aligned with Q86292_9REOV | Q86292 from UniProtKB/TrEMBL  Length:365

    Alignment length:366
                             1                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
         Q86292_9REOV     - -MEVCLPNGHQIVELINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMTDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
               SCOP domains d1jmug_ G: Outer capsid protein sigma 3                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1jmuG01 G:1-90,G:287-336 Outer-capsid protein sigma 3, small lobe                         1jmuG02 G:91-286,G:337-365 Outer-capsid protein sigma 3, large lobe                                                                                                                                 1jmuG01 G:1-90,G:287-336                          1jmuG02 G:91-286,G:337-365    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....ee...............eeee..eeee.....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.eeeee.hhhhh.....................hhhhhhhhhhhhhhhhhhhh..ee..ee..hhhhhh....hhhhhhh................eee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...eee........eee.hhhhh...eee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh.............eee...eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jmu G   0 xMEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
                            0-ACE                                                                                                                                                                                                                                                                                                                                                                         


Chain G from PDB  Type:PROTEIN  Length:366
 aligned with SIGM3_REOVL | P07939 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:366
                             1                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
          SIGM3_REOVL     - -MEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYDRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
               SCOP domains d1jmug_ G: Outer capsid protein sigma 3                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1jmuG01 G:1-90,G:287-336 Outer-capsid protein sigma 3, small lobe                         1jmuG02 G:91-286,G:337-365 Outer-capsid protein sigma 3, large lobe                                                                                                                                 1jmuG01 G:1-90,G:287-336                          1jmuG02 G:91-286,G:337-365    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....ee...............eeee..eeee.....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.eeeee.hhhhh.....................hhhhhhhhhhhhhhhhhhhh..ee..ee..hhhhhh....hhhhhhh................eee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...eee........eee.hhhhh...eee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh.............eee...eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jmu G   0 xMEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
                            0-ACE                                                                                                                                                                                                                                                                                                                                                                         


Chain H from PDB  Type:PROTEIN  Length:366
 aligned with Q86292_9REOV | Q86292 from UniProtKB/TrEMBL  Length:365

    Alignment length:366
                             1                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
         Q86292_9REOV     - -MEVCLPNGHQIVELINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMTDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
               SCOP domains d1jmuh_ H: Outer capsid protein sigma 3                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1jmuH01 H:1-90,H:287-336 Outer-capsid protein sigma 3, small lobe                         1jmuH02 H:91-286,H:337-365 Outer-capsid protein sigma 3, large lobe                                                                                                                                 1jmuH01 H:1-90,H:287-336                          1jmuH02 H:91-286,H:337-365    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....ee...............eeee..eeee.....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.eeeee.hhhhh.....................hhhhhhhhhhhhhhhhhhhh..ee..ee..hhhhhh....hhhhhhh................eee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...eee........eee.hhhhh...eee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh.............eee...eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jmu H   0 xMEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
                            0-ACE                                                                                                                                                                                                                                                                                                                                                                         


Chain H from PDB  Type:PROTEIN  Length:366
 aligned with SIGM3_REOVL | P07939 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:366
                             1                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
          SIGM3_REOVL     - -MEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYDRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
               SCOP domains d1jmuh_ H: Outer capsid protein sigma 3                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1jmuH01 H:1-90,H:287-336 Outer-capsid protein sigma 3, small lobe                         1jmuH02 H:91-286,H:337-365 Outer-capsid protein sigma 3, large lobe                                                                                                                                 1jmuH01 H:1-90,H:287-336                          1jmuH02 H:91-286,H:337-365    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....ee...............eeee..eeee.....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.eeeee.hhhhh.....................hhhhhhhhhhhhhhhhhhhh..ee..ee..hhhhhh....hhhhhhh................eee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...eee........eee.hhhhh...eee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh.............eee...eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jmu H   0 xMEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
                            0-ACE                                                                                                                                                                                                                                                                                                                                                                         


Chain I from PDB  Type:PROTEIN  Length:366
 aligned with Q86292_9REOV | Q86292 from UniProtKB/TrEMBL  Length:365

    Alignment length:366
                             1                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
         Q86292_9REOV     - -MEVCLPNGHQIVELINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMTDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
               SCOP domains d1jmui_ I: Outer capsid protein sigma 3                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1jmuI01 I:1-90,I:287-336 Outer-capsid protein sigma 3, small lobe                         1jmuI02 I:91-286,I:337-365 Outer-capsid protein sigma 3, large lobe                                                                                                                                 1jmuI01 I:1-90,I:287-336                          1jmuI02 I:91-286,I:337-365    CATH domains
           Pfam domains (1) -Reovirus_cap-1jmuI01 I:1-365                                                                                                                                                                                                                                                                                                                                                  Pfam domains (1)
           Pfam domains (2) -Reovirus_cap-1jmuI02 I:1-365                                                                                                                                                                                                                                                                                                                                                  Pfam domains (2)
           Pfam domains (3) -Reovirus_cap-1jmuI03 I:1-365                                                                                                                                                                                                                                                                                                                                                  Pfam domains (3)
         Sec.struct. author .......hhhhhhhhhhhhh.....ee...............eeee..eeee.....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.eeeee.hhhhh.....................hhhhhhhhhhhhhhhhhhhh..ee..ee..hhhhhh....hhhhhhh................eee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...eee........eee.hhhhh...eee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh.............eee...eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jmu I   0 xMEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
                            0-ACE                                                                                                                                                                                                                                                                                                                                                                         


Chain I from PDB  Type:PROTEIN  Length:366
 aligned with SIGM3_REOVL | P07939 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:366
                             1                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
          SIGM3_REOVL     - -MEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYDRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
               SCOP domains d1jmui_ I: Outer capsid protein sigma 3                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1jmuI01 I:1-90,I:287-336 Outer-capsid protein sigma 3, small lobe                         1jmuI02 I:91-286,I:337-365 Outer-capsid protein sigma 3, large lobe                                                                                                                                 1jmuI01 I:1-90,I:287-336                          1jmuI02 I:91-286,I:337-365    CATH domains
           Pfam domains (1) -Reovirus_cap-1jmuI01 I:1-365                                                                                                                                                                                                                                                                                                                                                  Pfam domains (1)
           Pfam domains (2) -Reovirus_cap-1jmuI02 I:1-365                                                                                                                                                                                                                                                                                                                                                  Pfam domains (2)
           Pfam domains (3) -Reovirus_cap-1jmuI03 I:1-365                                                                                                                                                                                                                                                                                                                                                  Pfam domains (3)
         Sec.struct. author .......hhhhhhhhhhhhh.....ee...............eeee..eeee.....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.eeeee.hhhhh.....................hhhhhhhhhhhhhhhhhhhh..ee..ee..hhhhhh....hhhhhhh................eee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...eee........eee.hhhhh...eee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh.............eee...eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jmu I   0 xMEVCLPNGHQIVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPSHAFNGVRLEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFSDTTKFGDLDYPVMIGDPMILG 365
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (6, 18)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 9)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Reovirus_M2] (1)
(-)
Clan: no clan defined [family: Reovirus_cap] (1)

(-) Gene Ontology  (24, 29)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MU1_REOVL | P11077)
molecular function
    GO:0046812    host cell surface binding    Interacting selectively and non-covalently with the surface of a host cell.
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0039665    permeabilization of host organelle membrane involved in viral entry into host cell    Induction of organellar membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with a viral capsid. Results in release of the virus contents from an organelle into the host cell cytoplasm.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
    GO:0044165    host cell endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0033650    host cell mitochondrion    A semiautonomous, self replicating organelle as found in host cells that occurs in varying numbers, shapes, and sizes in the cell cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0039624    viral outer capsid    The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain G,H,I   (Q86292_9REOV | Q86292)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.

Chain G,H,I   (SIGM3_REOVL | P07939)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006417    regulation of translation    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0039580    suppression by virus of host PKR activity    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity. Activation of PKR involves dsRNA binding followed by autophosphorylation. Phosphorylated PKR can then phosphorylate downstream targets such as the translation initiation factor eIF2 to inhibit protein synthesis. Viruses encode a number of mechanisms to inhibit the host antiviral response via PKR, including direct interaction with PKR, promoting degradation of PKR or altering the subcellular location of PKR.
    GO:0039503    suppression by virus of host innate immune response    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
    GO:0039502    suppression by virus of host type I interferon-mediated signaling pathway    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of type I interferon-mediated signaling in the host organism. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0039624    viral outer capsid    The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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        MU1_REOVL | P11077: 2cse
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(-) Related Entries Specified in the PDB File

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