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(-) Description

Title :  CRYSTAL STRUCTURE OF THE INSECTICIDAL BACTERIAL DEL ENDOTOXIN CRY3BB1 BACILLUS THURINGIENSIS
 
Authors :  V. Cody
Date :  29 Jun 01  (Deposition) - 19 Sep 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Cry3Bb1, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Galitsky, V. Cody, A. Wojtczak, D. Ghosh, J. R. Luft, W. Pangborn, L. English
Structure Of The Insecticidal Bacterial Delta-Endotoxin Cry3Bb1 Of Bacillus Thuringiensis.
Acta Crystallogr. , Sect. D V. 57 1101 2001
PubMed-ID: 11468393  |  Reference-DOI: 10.1107/S0907444901008186
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PESTICIDIAL CRYSTAL PROTEIN CRY3BB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 64-652
    Organism Scientific: BACILLUS THURINGIENSIS
    Organism Taxid: 1428
    Strain: EG7321
    Synonym: INSECTICIDAL DELTA-ENDOTOXIN CRYIIIB(B), CRYSTALINE ENTOMOCIDAL PROTOXIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1JI6)

(-) Sites  (0, 0)

(no "Site" information available for 1JI6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JI6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JI6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (7, 7)

Asymmetric/Biological Unit (7, 7)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_CR3BB_BACTU_002 *N97DCR3BB_BACTU  ---  ---AN97D
2UniProtVAR_CR3BB_BACTU_003 *I289VCR3BB_BACTU  ---  ---AI289V
3UniProtVAR_CR3BB_BACTU_004 *F352SCR3BB_BACTU  ---  ---AF352S
4UniProtVAR_CR3BB_BACTU_005 *S451GCR3BB_BACTU  ---  ---AS451G
5UniProtVAR_CR3BB_BACTU_006 *L590ICR3BB_BACTU  ---  ---AL590I
6UniProtVAR_CR3BB_BACTU_007 *K600ICR3BB_BACTU  ---  ---AK600I
7UniProtVAR_CR3BB_BACTU_008 *K624TCR3BB_BACTU  ---  ---AK624T
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JI6)

(-) Exons   (0, 0)

(no "Exon" information available for 1JI6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:589
 aligned with CR3BB_BACTU | Q06117 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:589
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643         
          CR3BB_BACTU    64 DAVGTGISVVGQILGVVGVPFAGALTSFYQSFLNTIWPSDADPWKAFMAQVEVLIDKKIEEYAKSKALAELQGLQNNFEDYVNALNSWKKTPLSLRSKRSQDRIRELFSQAESHFRNSMPSFAVSKFEVLFLPTYAQAANTHLLLLKDAQVFGEEWGYSSEDVAEFYHRQLKLTQQYTDHCVNWYNVGLNGLRGSTYDAWVKFNRFRREMTLTVLDLIVLFPFYDIRLYSKGVKTELTRDIFTDPIFSLNTLQEYGPTFLSIENSIRKPHLFDYLQGIEFHTRLQPGYFGKDSFNYWSGNYVETRPSIGSSKTITSPFYGDKSTEPVQKLSFDGQKVYRTIANTDVAAWPNGKVYLGVTKVDFSQYDDQKNETSTQTYDSKRNNGHVSAQDSIDQLPPETTDEPLEKAYSHQLNYAECFLMQDRRGTIPFFTWTHRSVDFFNTIDAEKITQLPVVKAYALSSGASIIEGPGFTGGNLLFLKESSNSIAKFKVTLNSAALLQRYRVRIRYASTTNLRLFVQNSNNDFLVIYINKTMNKDDDLTYQTFDLATTNSNMGFSGDKNELIIGAESFVSNEKIYIDKIEFIPVQL 652
               SCOP domains d1ji6a3 A:64-290 delta-Endotoxin (insectocide), N-terminal domain                                                                                                                                                                  d1ji6a2 A:291-502 delta-Endotoxin (insectocide), middle domain                                                                                                                                                      d1ji6a1 A:503-652 delta-Endotoxin, C-terminal domain                                                                                                   SCOP domains
               CATH domains 1ji6A01 A:64-290  [code=1.20.190.10, no name defined]                                                                                                                                                                              1ji6A02    1ji6A03 A:302-500  [code=2.100.10.10, no name defined]                                                                                                                                                 1ji6A02 A:291-301,A:501-651 Galactose-binding domain-like                                                                                              - CATH domains
               Pfam domains --Endotoxin_N-1ji6A03 A:66-291                                                                                                                                                                                                      ----Endotoxin_M-1ji6A02 A:296-502                                                                                                                                                                                  ---------Endotoxin_C-1ji6A01 A:512-651                                                                                                               - Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee......ee.........hhhhh.hhhhhhh........eeeeeeeeeeeee........eeeeeeeeeeeee.......ee...ee.......eeee....eeeeeeeeeeeee.....eeeeeeeeeeeeee....eeeeeeee.......eeeeehhhhh.......hhhhhh.eeeeeeeeee......eeeeeeeee.............eeeee.hhh.ee...eeee.........eeee.......eeeee..hhhhhh..eeeeeeeee...eeeeeee....eeeeee..........hhhhheeee...........eeeeeee........eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------D-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------S--------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------I---------I-----------------------T---------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ji6 A  64 DAVGTGISVVGQILGVVGVPFAGALTSFYQSFLNTIWPSDADPWKAFMAQVEVLIDKKIEEYAKSKALAELQGLQNNFEDYVNALNSWKKTPLSLRSKRSQDRIRELFSQAESHFRNSMPSFAVSKFEVLFLPTYAQAANTHLLLLKDAQVFGEEWGYSSEDVAEFYHRQLKLTQQYTDHCVNWYNVGLNGLRGSTYDAWVKFNRFRREMTLTVLDLIVLFPFYDIRLYSKGVKTELTRDIFTDPIFSLNTLQEYGPTFLSIENSIRKPHLFDYLQGIEFHTRLQPGYFGKDSFNYWSGNYVETRPSIGSSKTITSPFYGDKSTEPVQKLSFDGQKVYRTIANTDVAAWPNGKVYLGVTKVDFSQYDDQKNETSTQTYDSKRNNGHVSAQDSIDQLPPETTDEPLEKAYSHQLNYAECFLMQDRRGTIPFFTWTHRSVDFFNTIDAEKITQLPVVKAYALSSGASIIEGPGFTGGNLLFLKESSNSIAKFKVTLNSAALLQRYRVRIRYASTTNLRLFVQNSNNDFLVIYINKTMNKDDDLTYQTFDLATTNSNMGFSGDKNELIIGAESFVSNEKIYIDKIEFIPVQL 652
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Clan: GBD (153)
(-)
Clan: no clan defined [family: Endotoxin_M] (1)
(-)
Clan: no clan defined [family: Endotoxin_N] (1)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CR3BB_BACTU | Q06117)
molecular function
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0030435    sporulation resulting in formation of a cellular spore    The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.

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(-) Related Entries Specified in the PDB File

1dlc CRYSTAL STRUCTURE OF INSECTICIDAL -ENDOTOXIN FROM BACILLUS THURINGIENSIS AT 2.5 A RESOLUTION