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(-) Description

Title :  NAP PROTEIN FROM HELICOBACTER PYLORI
 
Authors :  G. Zanotti, E. Papinutto, W. G. Dundon, R. Battistutta, M. Seveso, G. Del Giudice, R. Rappuoli, C. Montecucco
Date :  29 Jun 01  (Deposition) - 09 Oct 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Dodecamer, Four-Helix Bundle, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Zanotti, E. Papinutto, W. G. Dundon, R. Battistutta, M. Seveso, G. Del Giudice, R. Rappuoli, C. Montecucco
Structure Of The Neutrophil-Activating Protein From Helicobacter Pylori
J. Mol. Biol. V. 323 125 2002
PubMed-ID: 12368104  |  Reference-DOI: 10.1016/S0022-2836(02)00879-3
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NEUTROPHIL-ACTIVATING PROTEIN A
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: BACILLUS SUBTILIS
    Expression System Taxid: 1423
    Expression System Vector Type: PLASMID
    Gene: NAPA
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: NAP A, BACTERIOFERRITIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 36)

Asymmetric/Biological Unit (3, 36)
No.NameCountTypeFull Name
1FE12Ligand/IonFE (III) ION
2MPD12Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3UNX12Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:25 , UNX A:802 , ASP D:52 , GLU D:56BINDING SITE FOR RESIDUE FE D 801
02AC2SOFTWAREHIS B:25 , UNX B:804 , ASP C:52 , GLU C:56BINDING SITE FOR RESIDUE FE C 803
03AC3SOFTWAREASP B:52 , GLU B:56 , HIS C:25 , UNX C:806BINDING SITE FOR RESIDUE FE B 805
04AC4SOFTWAREASP A:52 , GLU A:56 , HIS D:25 , UNX D:808BINDING SITE FOR RESIDUE FE A 807
05AC5SOFTWAREHIS E:25 , UNX E:810 , ASP H:52 , GLU H:56BINDING SITE FOR RESIDUE FE H 809
06AC6SOFTWAREHIS F:25 , UNX F:812 , ASP G:52 , GLU G:56BINDING SITE FOR RESIDUE FE G 811
07AC7SOFTWAREASP F:52 , GLU F:56 , HIS G:25 , UNX G:814BINDING SITE FOR RESIDUE FE F 813
08AC8SOFTWAREASP E:52 , GLU E:56 , HIS H:25 , UNX H:816BINDING SITE FOR RESIDUE FE E 815
09AC9SOFTWAREHIS I:25 , UNX I:818 , ASP L:52 , GLU L:56BINDING SITE FOR RESIDUE FE L 817
10BC1SOFTWAREHIS J:25 , UNX J:820 , ASP K:52 , GLU K:56BINDING SITE FOR RESIDUE FE K 819
11BC2SOFTWAREASP J:52 , GLU J:56 , HIS K:25 , UNX K:822BINDING SITE FOR RESIDUE FE J 821
12BC3SOFTWAREASP I:52 , GLU I:56 , HIS L:25 , UNX L:824BINDING SITE FOR RESIDUE FE I 823
13BC4SOFTWAREHIS A:37 , FE D:801 , LYS G:134BINDING SITE FOR RESIDUE UNX A 802
14BC5SOFTWAREHIS B:37 , FE C:803 , LYS E:134BINDING SITE FOR RESIDUE UNX B 804
15BC6SOFTWAREFE B:805 , HIS C:37 , LYS F:134BINDING SITE FOR RESIDUE UNX C 806
16BC7SOFTWAREFE A:807 , HIS D:37 , LYS H:134BINDING SITE FOR RESIDUE UNX D 808
17BC8SOFTWAREHIS E:37 , FE H:809 , LYS K:134BINDING SITE FOR RESIDUE UNX E 810
18BC9SOFTWAREHIS F:37 , FE G:811 , LYS I:134BINDING SITE FOR RESIDUE UNX F 812
19CC1SOFTWAREFE F:813 , HIS G:37 , LYS J:134BINDING SITE FOR RESIDUE UNX G 814
20CC2SOFTWAREFE E:815 , HIS H:37 , LYS L:134BINDING SITE FOR RESIDUE UNX H 816
21CC3SOFTWARELYS C:134 , HIS I:37 , GLU L:56 , FE L:817BINDING SITE FOR RESIDUE UNX I 818
22CC4SOFTWAREHIS J:37 , FE K:819BINDING SITE FOR RESIDUE UNX J 820
23CC5SOFTWAREFE J:821 , HIS K:37BINDING SITE FOR RESIDUE UNX K 822
24CC6SOFTWARELYS D:134 , GLU I:56 , FE I:823 , HIS L:37BINDING SITE FOR RESIDUE UNX L 824
25CC7SOFTWAREGLU A:46 , TYR A:99 , LEU A:132 , SER A:135BINDING SITE FOR RESIDUE MPD A 700
26CC8SOFTWAREGLU B:46 , TYR B:99 , LEU B:132 , SER B:135BINDING SITE FOR RESIDUE MPD B 701
27CC9SOFTWAREGLU C:46 , TYR C:99 , LEU C:132 , SER C:135BINDING SITE FOR RESIDUE MPD C 702
28DC1SOFTWAREGLU D:46 , TYR D:99 , LEU D:132 , SER D:135BINDING SITE FOR RESIDUE MPD D 703
29DC2SOFTWAREGLU E:46 , TYR E:99 , LEU E:132 , SER E:135BINDING SITE FOR RESIDUE MPD E 704
30DC3SOFTWAREGLU F:46 , TYR F:99 , LEU F:132 , SER F:135BINDING SITE FOR RESIDUE MPD F 705
31DC4SOFTWAREGLU G:46 , TYR G:99 , LEU G:132 , SER G:135BINDING SITE FOR RESIDUE MPD G 706
32DC5SOFTWAREGLU H:46 , TYR H:99 , LEU H:132 , SER H:135BINDING SITE FOR RESIDUE MPD H 707
33DC6SOFTWAREGLU I:46 , TYR I:99 , LEU I:132 , SER I:135BINDING SITE FOR RESIDUE MPD I 708
34DC7SOFTWAREGLU J:46 , TYR J:99 , LEU J:132 , SER J:135BINDING SITE FOR RESIDUE MPD J 709
35DC8SOFTWAREGLU K:46 , TYR K:99 , LEU K:132 , SER K:135BINDING SITE FOR RESIDUE MPD K 710
36DC9SOFTWAREGLU L:46 , TYR L:99 , LEU L:132 , SER L:135BINDING SITE FOR RESIDUE MPD L 711

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JI4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JI4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (14, 168)

Asymmetric/Biological Unit (14, 168)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_DPS_HELPY_001 *H9VDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LH9V
02UniProtVAR_DPS_HELPY_002 *N35HDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN35H
03UniProtVAR_DPS_HELPY_003 *E46GDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LE46G
04UniProtVAR_DPS_HELPY_004 *M50LDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LM50L
05UniProtVAR_DPS_HELPY_005 *I58LDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LI58L
06UniProtVAR_DPS_HELPY_006 *V59ADPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LV59A
07UniProtVAR_DPS_HELPY_007 *S70TDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LS70T
08UniProtVAR_DPS_HELPY_008 *I73LDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LI73L
09UniProtVAR_DPS_HELPY_009 *E80DDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LE80D
10UniProtVAR_DPS_HELPY_010 *E97DDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LE97D
11UniProtVAR_DPS_HELPY_011 *E97GDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LE97G
12UniProtVAR_DPS_HELPY_012 *Y101HDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LY101H
13UniProtVAR_DPS_HELPY_013 *K107EDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LK107E
14UniProtVAR_DPS_HELPY_014 *Q140EDPS_HELPY  ---  ---A/B/C/D/E/F/G/H/I/J/K/LQ140E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 24)

Asymmetric/Biological Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.DPS_HELPY25-41
 
 
 
 
 
 
 
 
 
 
 		  12A:25-41
B:25-41
C:25-41
D:25-41
E:25-41
F:25-41
G:25-41
H:25-41
I:25-41
J:25-41
K:25-41
L:25-41
2DPS_2PS00819 Dps protein family signature 2.DPS_HELPY51-65
 
 
 
 
 
 
 
 
 
 
 		  12A:51-65
B:51-65
C:51-65
D:51-65
E:51-65
F:51-65
G:51-65
H:51-65
I:51-65
J:51-65
K:51-65
L:51-65

(-) Exons   (0, 0)

(no "Exon" information available for 1JI4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4a_ A: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4A00 A:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 A   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain B from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4b_ B: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4B00 B:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 B   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain C from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4c_ C: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4C00 C:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 C   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain D from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4d_ D: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4D00 D:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 D   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain E from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4e_ E: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4E00 E:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 E   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain F from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4f_ F: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4F00 F:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 F   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain G from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4g_ G: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4G00 G:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 G   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain H from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4h_ H: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4H00 H:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 H   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain I from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4i_ I: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4I00 I:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 I   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain J from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4j_ J: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4J00 J:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 J   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain K from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4k_ K: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4K00 K:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 K   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain L from PDB  Type:PROTEIN  Length:144
 aligned with DPS_HELPY | P43313 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
            DPS_HELPY     1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
               SCOP domains d1ji4l_ L: Dodecameric ferritin homolog                                                                                                          SCOP domains
               CATH domains 1ji4L00 L:1-144  [code=1.20.1260.10, no name defined]                                                                                            CATH domains
           Pfam domains (1) ---Ferritin-1ji4L01 L:4-144                                                                                                                      Pfam domains (1)
           Pfam domains (2) ---Ferritin-1ji4L02 L:4-144                                                                                                                      Pfam domains (2)
           Pfam domains (3) ---Ferritin-1ji4L03 L:4-144                                                                                                                      Pfam domains (3)
           Pfam domains (4) ---Ferritin-1ji4L04 L:4-144                                                                                                                      Pfam domains (4)
           Pfam domains (5) ---Ferritin-1ji4L05 L:4-144                                                                                                                      Pfam domains (5)
           Pfam domains (6) ---Ferritin-1ji4L06 L:4-144                                                                                                                      Pfam domains (6)
           Pfam domains (7) ---Ferritin-1ji4L07 L:4-144                                                                                                                      Pfam domains (7)
           Pfam domains (8) ---Ferritin-1ji4L08 L:4-144                                                                                                                      Pfam domains (8)
           Pfam domains (9) ---Ferritin-1ji4L09 L:4-144                                                                                                                      Pfam domains (9)
          Pfam domains (10) ---Ferritin-1ji4L10 L:4-144                                                                                                                      Pfam domains (10)
          Pfam domains (11) ---Ferritin-1ji4L11 L:4-144                                                                                                                      Pfam domains (11)
          Pfam domains (12) ---Ferritin-1ji4L12 L:4-144                                                                                                                      Pfam domains (12)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) --------V-------------------------H----------G---L-------LA----------T--L------D----------------D---H-----E--------------------------------E---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------G----------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji4 L   1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHLA 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Up-down Bundle (3216)
(-)
Topology: Ferritin; (180)
(-)
Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)
(-)
Helicobacter pylori. Organism_taxid: 210. (1)
1a1ji4A00A:1-144
1b1ji4B00B:1-144
1c1ji4K00K:1-144
1d1ji4L00L:1-144
1e1ji4C00C:1-144
1f1ji4D00D:1-144
1g1ji4E00E:1-144
1h1ji4F00F:1-144
1i1ji4G00G:1-144
1j1ji4H00H:1-144
1k1ji4I00I:1-144
1l1ji4J00J:1-144

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (DPS_HELPY | P43313)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1ji4
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  DPS_HELPY | P43313
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1dps E. COLI DPS
1qgh MINI-FERRITIN FROM LISTERIA INNOCUA