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(-) Description

Title :  GLUCARATE DEHYDRATASE FROM E.COLI N341D MUTANT
 
Authors :  A. M. Gulick, B. K. Hubbard, J. A. Gerlt, I. Rayment
Date :  13 Jun 01  (Deposition) - 05 Sep 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Tim Barrel, Alpha/Beta Barrel, Enolase Superfamily, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Gulick, B. K. Hubbard, J. A. Gerlt, I. Rayment
Evolution Of Enzymatic Activities In The Enolase Superfamily: Identification Of The General Acid Catalyst In The Active Site Of D-Glucarate Dehydratase From Escherichia Coli.
Biochemistry V. 40 10054 2001
PubMed-ID: 11513584  |  Reference-DOI: 10.1021/BI010733B
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUCARATE DEHYDRATASE
    Chains: A, B, C, D
    EC Number: 4.2.1.40
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1GLR4Ligand/Ion2,3-DIHYDROXY-5-OXO-HEXANEDIOATE
2IPA8Ligand/IonISOPROPYL ALCOHOL
3MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1GLR2Ligand/Ion2,3-DIHYDROXY-5-OXO-HEXANEDIOATE
2IPA4Ligand/IonISOPROPYL ALCOHOL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GLR2Ligand/Ion2,3-DIHYDROXY-5-OXO-HEXANEDIOATE
2IPA4Ligand/IonISOPROPYL ALCOHOL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:235 , GLU A:260 , ASN A:289 , GLR A:2510 , HOH A:4655BINDING SITE FOR RESIDUE MG A 4500
02AC2SOFTWAREASP B:235 , GLU B:260 , ASN B:289 , GLR B:2511 , HOH B:4638BINDING SITE FOR RESIDUE MG B 4501
03AC3SOFTWAREASP C:235 , GLU C:260 , ASN C:289 , GLR C:2512 , HOH C:4698BINDING SITE FOR RESIDUE MG C 4502
04AC4SOFTWAREASP D:235 , GLU D:260 , ASN D:289 , GLR D:2513 , HOH D:4679BINDING SITE FOR RESIDUE MG D 4503
05AC5SOFTWAREASN A:27 , HIS A:32 , THR A:103 , PHE A:104 , TYR A:150 , PHE A:152 , LYS A:205 , LYS A:207 , ASP A:235 , ASN A:237 , GLU A:260 , ASN A:289 , HIS A:339 , SER A:340 , ASP A:341 , HIS A:368 , ARG A:422 , MG A:4500 , HOH A:4625 , HOH A:4654 , HOH A:4753BINDING SITE FOR RESIDUE GLR A 2510
06AC6SOFTWAREASN B:27 , HIS B:32 , THR B:103 , TYR B:150 , PHE B:152 , LYS B:205 , LYS B:207 , ASP B:235 , ASN B:237 , GLU B:260 , ASN B:289 , HIS B:339 , SER B:340 , ASP B:341 , HIS B:368 , ARG B:422 , MG B:4501 , HOH B:4562 , HOH B:4630BINDING SITE FOR RESIDUE GLR B 2511
07AC7SOFTWAREASN C:27 , HIS C:32 , THR C:103 , TYR C:150 , PHE C:152 , LYS C:205 , LYS C:207 , ASP C:235 , ASN C:237 , GLU C:260 , ASN C:289 , HIS C:339 , SER C:340 , ASP C:341 , HIS C:368 , ARG C:422 , MG C:4502 , HOH C:4599 , HOH C:4650 , HOH C:4697BINDING SITE FOR RESIDUE GLR C 2512
08AC8SOFTWAREASN D:27 , HIS D:32 , THR D:103 , PHE D:104 , TYR D:150 , PHE D:152 , LYS D:205 , LYS D:207 , ASP D:235 , ASN D:237 , GLU D:260 , ASN D:289 , HIS D:339 , SER D:340 , ASP D:341 , HIS D:368 , ARG D:422 , MG D:4503 , HOH D:4638 , HOH D:4647 , HOH D:4678BINDING SITE FOR RESIDUE GLR D 2513
09AC9SOFTWARELEU A:302 , PHE A:332 , GLY C:299 , LEU C:302 , SER C:303 , HOH C:4699BINDING SITE FOR RESIDUE IPA C 3601
10BC1SOFTWARELEU B:302 , PHE B:332 , HOH B:4603 , HOH B:4725 , GLY D:299 , LEU D:302 , SER D:303 , HOH D:4524 , HOH D:4810BINDING SITE FOR RESIDUE IPA D 3602
11BC2SOFTWAREGLY A:299 , LEU A:302 , SER A:303 , LEU C:302 , PHE C:332 , HOH C:4699BINDING SITE FOR RESIDUE IPA A 3603
12BC3SOFTWAREGLY B:299 , SER B:303 , HOH B:4603 , HOH B:4629 , LEU D:302 , PHE D:332 , HOH D:4518BINDING SITE FOR RESIDUE IPA B 3604
13BC4SOFTWAREARG A:88 , ASP A:95 , ILE A:110 , HOH A:4713BINDING SITE FOR RESIDUE IPA A 3605
14BC5SOFTWAREARG B:88 , ASP B:95 , THR B:109BINDING SITE FOR RESIDUE IPA B 3606
15BC6SOFTWAREARG C:88 , ALA C:92 , ASP C:95 , THR C:109BINDING SITE FOR RESIDUE IPA C 3607
16BC7SOFTWAREARG D:88 , ALA D:92 , ASP D:95 , HOH D:4623BINDING SITE FOR RESIDUE IPA D 3608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JDF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JDF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JDF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JDF)

(-) Exons   (0, 0)

(no "Exon" information available for 1JDF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECO57 | P0AES3 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECO57     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfa2 A:5-137 D-glucarate dehydratase                                                                                              d1jdfa1 A:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfA01 A:6-137,A:399-416 Enolase-like, N-terminal domain                                                                           1jdfA02 A:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfA01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....ee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.......eee..eee....hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh...........hhhhhh...............eee...........hhhhhhhhhhhhhhhh.....hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf A   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  


Chain A from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECOLI | P0AES2 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECOLI     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfa2 A:5-137 D-glucarate dehydratase                                                                                              d1jdfa1 A:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfA01 A:6-137,A:399-416 Enolase-like, N-terminal domain                                                                           1jdfA02 A:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfA01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....ee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.......eee..eee....hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh...........hhhhhh...............eee...........hhhhhhhhhhhhhhhh.....hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf A   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  


Chain B from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECO57 | P0AES3 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECO57     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfb2 B:5-137 D-glucarate dehydratase                                                                                              d1jdfb1 B:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfB01 B:6-137,B:399-416 Enolase-like, N-terminal domain                                                                           1jdfB02 B:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfB01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....ee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.......eee..eee....hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh..........hhhhhh...............eee...........hhhhhhhhhhhhhhhh.....hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf B   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  


Chain B from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECOLI | P0AES2 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECOLI     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfb2 B:5-137 D-glucarate dehydratase                                                                                              d1jdfb1 B:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfB01 B:6-137,B:399-416 Enolase-like, N-terminal domain                                                                           1jdfB02 B:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfB01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....ee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.......eee..eee....hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh..........hhhhhh...............eee...........hhhhhhhhhhhhhhhh.....hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf B   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  


Chain C from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECO57 | P0AES3 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECO57     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfc2 C:5-137 D-glucarate dehydratase                                                                                              d1jdfc1 C:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfC01 C:6-137,C:399-416 Enolase-like, N-terminal domain                                                                           1jdfC02 C:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfC01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.......eee..eee.ee.hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh..........hhhhhh...............eee...........hhhhhhhhhhhhhhh......hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf C   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  


Chain C from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECOLI | P0AES2 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECOLI     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfc2 C:5-137 D-glucarate dehydratase                                                                                              d1jdfc1 C:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfC01 C:6-137,C:399-416 Enolase-like, N-terminal domain                                                                           1jdfC02 C:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfC01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.......eee..eee.ee.hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh..........hhhhhh...............eee...........hhhhhhhhhhhhhhh......hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf C   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  


Chain D from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECO57 | P0AES3 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECO57     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfd2 D:5-137 D-glucarate dehydratase                                                                                              d1jdfd1 D:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfD01 D:6-137,D:399-416 Enolase-like, N-terminal domain                                                                           1jdfD02 D:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfD01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....ee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.......eee..eee....hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh...........hhhhhh...............eee...........hhhhhhhhhhhhhhh......hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf D   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  


Chain D from PDB  Type:PROTEIN  Length:442
 aligned with GUDD_ECOLI | P0AES2 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:442
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444  
           GUDD_ECOLI     5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
               SCOP domains d1jdfd2 D:5-137 D-glucarate dehydratase                                                                                              d1jdfd1 D:138-446 D-glucarate dehydratase                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1jdfD01 D:6-137,D:399-416 Enolase-like, N-terminal domain                                                                           1jdfD02 D:138-398 Enolase superfamily                                                                                                                                                                                                                                1jdfD01           ------------------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....ee..ee...eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.......eee..eee....hhhhh...........hhhhhhh.....hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......ee.........hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh...........hhhhhh...............eee...........hhhhhhhhhhhhhhh......hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jdf D   5 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR 446
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JDF)

(-) Gene Ontology  (8, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GUDD_ECOLI | P0AES2)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008872    glucarate dehydratase activity    Catalysis of the reaction: D-glucarate = 5-dehydro-4-deoxy-D-glucarate + H2O.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0042838    D-glucarate catabolic process    The chemical reactions and pathways resulting in the breakdown of D-glucarate, the D-enantiomer of glucarate.
    GO:0019394    glucarate catabolic process    The chemical reactions and pathways resulting in the breakdown of glucarate, the anion of glucaric acid.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Chain A,B,C,D   (GUDD_ECO57 | P0AES3)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008872    glucarate dehydratase activity    Catalysis of the reaction: D-glucarate = 5-dehydro-4-deoxy-D-glucarate + H2O.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0042838    D-glucarate catabolic process    The chemical reactions and pathways resulting in the breakdown of D-glucarate, the D-enantiomer of glucarate.
    GO:0019394    glucarate catabolic process    The chemical reactions and pathways resulting in the breakdown of glucarate, the anion of glucaric acid.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GUDD_ECO57 | P0AES3: 1ec7 1ec8 1ec9 1ecq 1jct
        GUDD_ECOLI | P0AES2: 1ec7 1ec8 1ec9 1ecq 1jct 3pwg 3pwi 4gyp

(-) Related Entries Specified in the PDB File

1ec7 GLUCARATE DEHYDRATASE, NATIVE
1ec8 GLUCARATE DEHYDRATASE BOUND TO 5-KETO-4-DEOXYGLUCARATE
1ec9 GLUCARATE DEHYDRATASE BOUND TO XYLAROHYDROXAMATE
1ecq GLUCARATE DEHYDRATASE BOUND TO 4-DEOXYGLUCARATE