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(-) Description

Title :  SOLUTION STRUCTURE OF THE NUCLEOPEPTIDE [AC-LYS-TRP-LYS-HSE(P3*DGCATCG)-ALA]-[P5*DCGTAGC]
 
Authors :  I. Gomez-Pinto, V. Marchan, F. Gago, A. Grandas, C. Gonzalez
Date :  28 May 01  (Deposition) - 21 Jan 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C  (10x)
Keywords :  Covalently Linked Peptide-Dna Complex, Tryptophan Stacking, Dna Binding Protein/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Gomez-Pinto, V. Marchan, F. Gago, A. Grandas, C. Gonzalez
Solution Structure And Stability Of Tryptophan-Containing Nucleopeptide Duplexes
Chembiochem V. 4 40 2003
PubMed-ID: 12512075  |  Reference-DOI: 10.1002/CBIC.200390012
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*CP*TP*AP*CP*(PGN))-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*CP*GP*TP*AP*GP*C)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - PEPTIDE ACE-LYS-TRP-LYS-HSE-ALA
    Chains: C
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

NMR Structure (3, 3)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2HSE1Mod. Amino AcidL-HOMOSERINE
3PGN1Mod. Nucleotide2'-DEOXYGUANOSINE-3',5'-DIPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1J9N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J9N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1J9N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J9N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1J9N)

(-) Exons   (0, 0)

(no "Exon" information available for 1J9N)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:6
                                     
                  1j9n A  1 GCTACg  6
                                 |
                                 6-PGN


Chain B from PDB  Type:DNA  Length:6
                                     
                  1j9n B  7 CGTAGC 12


Chain C from PDB  Type:PROTEIN  Length:6
                                     
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                  1j9n C 12 xKWKsA 17
                            |   | 
                           12-ACE 
                               16-HSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1J9N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1J9N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J9N)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1J9N)

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 Related Entries

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