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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUTAREDOXIN-LIKE PROTEIN FROM PYROCOCCUS HORIKOSHII
 
Authors :  Y. Tanaka, E. Tanabe, K. Tsumoto, I. Kumagai, M. Yao, I. Tanaka
Date :  11 Nov 02  (Deposition) - 11 May 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Alpha/Beta, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tanaka, E. Tanabe, K. Tsumoto, I. Kumagai, M. Yao, I. Tanaka
Protein Disulfide Isomerase From Hyperthermophile As An Additives Of Refolding Of An Immunoglobulin-Folded Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTAREDOXIN-LIKE PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET20B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PH0178
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1J08)

(-) Sites  (0, 0)

(no "Site" information available for 1J08)

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:35 -A:38
2A:146 -A:149
3B:35 -B:38
4B:146 -B:149
5C:35 -C:38
6C:146 -C:149
7D:35 -D:38
8D:146 -D:149
9E:35 -E:38
10E:146 -E:149
11F:35 -F:38
12F:146 -F:149
13G:35 -G:38
14G:146 -G:149
15H:35 -H:38
16H:146 -H:149

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ala A:79 -Pro A:80
2Val A:193 -Pro A:194
3Ala B:79 -Pro B:80
4Val B:193 -Pro B:194
5Ala C:79 -Pro C:80
6Val C:193 -Pro C:194
7Ala D:79 -Pro D:80
8Val D:193 -Pro D:194
9Ala E:79 -Pro E:80
10Val E:193 -Pro E:194
11Ala F:79 -Pro F:80
12Val F:193 -Pro F:194
13Ala G:79 -Pro G:80
14Val G:193 -Pro G:194
15Ala H:79 -Pro H:80
16Val H:193 -Pro H:194

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J08)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1J08)

(-) Exons   (0, 0)

(no "Exon" information available for 1J08)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08a1 A:2-119 Protein disulfide isomerase, PDI                                                                      d1j08a2 A:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08A01 A:2-117 Glutaredoxin                                                                                        --1j08A02 A:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh......eeeee.......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhh.......eeeeee..eeeeeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 A   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain B from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08b1 B:2-119 Protein disulfide isomerase, PDI                                                                      d1j08b2 B:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08B01 B:2-117 Glutaredoxin                                                                                        --1j08B02 B:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh......eeeeee......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 B   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain C from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08c1 C:2-119 Protein disulfide isomerase, PDI                                                                      d1j08c2 C:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08C01 C:2-117 Glutaredoxin                                                                                        --1j08C02 C:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh......eeeeee......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 C   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain D from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08d1 D:2-119 Protein disulfide isomerase, PDI                                                                      d1j08d2 D:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08D01 D:2-117 Glutaredoxin                                                                                        --1j08D02 D:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh......eeeeee......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 D   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain E from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08e1 E:2-119 Protein disulfide isomerase, PDI                                                                      d1j08e2 E:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08E01 E:2-117 Glutaredoxin                                                                                        --1j08E02 E:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh......eeeeee......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 E   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain F from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08f1 F:2-119 Protein disulfide isomerase, PDI                                                                      d1j08f2 F:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08F01 F:2-117 Glutaredoxin                                                                                        --1j08F02 F:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh......eeeeee......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 F   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain G from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08g1 G:2-119 Protein disulfide isomerase, PDI                                                                      d1j08g2 G:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08G01 G:2-117 Glutaredoxin                                                                                        --1j08G02 G:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhh.......eeeeee......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 G   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain H from PDB  Type:PROTEIN  Length:225
 aligned with O57917_PYRHO | O57917 from UniProtKB/TrEMBL  Length:226

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
         O57917_PYRHO     2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
               SCOP domains d1j08h1 H:2-119 Protein disulfide isomerase, PDI                                                                      d1j08h2 H:120-226 Protein disulfide isomerase, PDI                                                          SCOP domains
               CATH domains 1j08H01 H:2-117 Glutaredoxin                                                                                        --1j08H02 H:120-225 Glutaredoxin                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh......eeeeee......eeee.....hhhhhhhhhhhhhhhh....hhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee..eeeeeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j08 H   2 GLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: Thioredoxin fold (994)
(-)
Superfamily: Thioredoxin-like (992)
(-)
Family: PDI-like (13)
(-)
Protein domain: Protein disulfide isomerase, PDI (9)
(-)
Pyrococcus horikoshii [TaxId: 53953] (1)
1ad1j08a1A:2-119
1bd1j08a2A:120-226
1cd1j08f1F:2-119
1dd1j08f2F:120-226
1ed1j08g1G:2-119
1fd1j08g2G:120-226
1gd1j08h1H:2-119
1hd1j08h2H:120-226
1id1j08b1B:2-119
1jd1j08b2B:120-226
1kd1j08c1C:2-119
1ld1j08c2C:120-226
1md1j08d1D:2-119
1nd1j08d2D:120-226
1od1j08e1E:2-119
1pd1j08e2E:120-226

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Glutaredoxin (620)
(-)
Homologous Superfamily: Glutaredoxin (617)
(-)
Pyrococcus horikoshii. Organism_taxid: 53953. (1)
1a1j08A01A:2-117
1b1j08B01B:2-117
1c1j08C02C:120-225
1d1j08D02D:120-225
1e1j08E02E:120-225
1f1j08F02F:120-225
1g1j08G02G:120-225
1h1j08H02H:120-225
1i1j08C01C:2-117
1j1j08D01D:2-117
1k1j08E01E:2-117
1l1j08F01F:2-117
1m1j08G01G:2-117
1n1j08H01H:2-117
1o1j08A02A:120-225
1p1j08B02B:120-225

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J08)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (O57917_PYRHO | O57917)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0015035    protein disulfide oxidoreductase activity    Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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