1IV8 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MALTOOLIGOSYL TREHALOSE SYNTHASE

Authors :   M. Kobayashi, M. Kubota, Y. Matsuura

Date :   15 Mar 02 (Deposition) - 25 Feb 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A

Keywords :   Trehalose Synthase, Beta Alpha Barrel, Intramolecular Transglucosylation, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Kobayashi, M. Kubota, Y. Matsuura
Refined Structure And Functional Implications Of Trehalose Synthase From Sulfolobus Acidocaldarius
J. Appl. Glyosci. V. 50 1 2003
PubMed: search
(for further references see the PDB file header)

Molecule 1 - MALTOOLIGOSYL TREHALOSE SYNTHASE
	Chains	:	A
	EC Number	:	5.4.99.15
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PKST9
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SULFOLOBUS ACIDOCALDARIUS
	Organism Taxid	:	2285

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 19)

No.	Name	Count	Type	Full Name
1	MLY	9	Mod. Amino Acid	N-DIMETHYL-LYSINE
2	MLZ	10	Mod. Amino Acid	N-METHYL-LYSINE

(no "Site" information available for 1IV8)

Asymmetric/Biological Unit

No.	Residues
1	A:345	-	A:360

Asymmetric/Biological Unit

No.	Residues
1	Asp A:596	-	Pro A:597

(no "SAP(SNP)/Variant" information available for 1IV8)

(no "PROSITE Motif" information available for 1IV8)

(no "Exon" information available for 1IV8)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:720
 aligned with Q53688_9CREN | Q53688 from UniProtKB/TrEMBL  Length:720

    Alignment length:720
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720
         Q53688_9CREN     1 MISATYRLQLNKNFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVEKDHVFQESHSKILDLDVDGYRIDHIDGLYDPEKYINDLRSIIKNKIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDSIYENFTAEKISISESIKKIKAQIIDELFSYEVKRLASQLGISYDILRDYLSCIDVYRTYANQIVKECDKTNEIEEATKRNPEAYTKLQQYMPAVYAKAYEDTFLFRYNRLISINEVGSDLRYYKISPDQFHVFNQKRRGKITLNATSTHDTKFSEDVRMKISVLSEFPEEWKNKVEEWHSIINPKVSRNDEYRYYQVLVGSFYEGFSNDFKERIKQHMIKSVREAKINTSWRNQNKEYENRVMELVEETFTNKDFIKSFMKFESKIRRIGMIKSLSLVALKIMSAGIPDFYQGTEIWRYLLTDPDNRVPVDFKKLHEILEKSKKFEKNMLESMDDGRIKMYLTYKLLSLRKQLAEDFLKGEYKGLDLEEGLCGFIRFNKILVIIKTKGSVNYKLKLEEGAIYTDVLTGEEIKKEVQINELPRILVRM 720
               SCOP domains d1iv8a2 A:1-653 Maltooligosyl trehalose synthase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             d1iv8a1 A:654-720 Maltooligosyl trehalose synthase                  SCOP domains
               CATH domains 1iv8A01 A:1-87,A:207-285,A:419-459,A:557-654 Glycosidases                              1iv8A02 A:88-205 Maltooligosyl trehalose synthase, domain 2                                                           -1iv8A01 A:1-87,A:207-285,A:419-459,A:557-654 Glycosidases                      -------------------1iv8A03 A:305-389 Maltooligosyl trehalose synthase; domain 3                         -----------------------------1iv8A01 Glycosidases                     1iv8A04 A:460-556 Maltooligosyl trehalose synthase; domain 4                                     1iv8A01 A:1-87,A:207-285,A:419-459,A:557-654 Glycosidases                                         1iv8A05 A:655-720 Golgi alpha-mannosidase II                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee......hhhhhhhhhhhhhhhh..eeee...eee.........eeeeeee....hhhhhhhhhhhhhhhh..eeeeee...eee....hhhhhhhhhhhhhh.hhhhh........eeeeee..hhhhhhhh..eeeee....eeeee..eeee......hhhhhhh...eeeee........ee..eeeeee....hhhhhhhhh.hhhhh...eeee.hhhhh.hhhhhhhhhhhhhh..eeee...............ee.hhhhhhhhhhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhh...........hhhhhhhhhhhhh....ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee............hhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.....eeeeee...eeeeee......eeee.....eeee.....eee.eeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1iv8 A   1 MISATYRLQLNKNFNFGDVIDNLWYFkDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLkMGkkSkYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVEkDHVFQESHSkILDLDVDGYRIDHIDGLYDPEKYINDLRSIIKNkIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDSIYENFTAEKISISESIkKIKAQIIDELFSYEVkRLASQLGISYDILRDYLSCIDVYRTYANQIVKECDKTNEIEEATKRNPEAYTKLQQYMPAVYAkAYEDTFLFRYNRLISINEVGSDLRYYKISPDQFHVFNQKRRGKITLNATSTHDTKFSEDVRMKISVLSEFPEEWKNkVEEWHSIINPKVSRNDEYRYYQVLVGSFYEGFSNDFkERIkQHMIkSVREAkINTSWRNQNKEYENRVMELVEETFTNKDFIKSFMKFESkIRRIGMIKSLSLVALKIMSAGIPDFYQGTEIWRYLLTDPDNRVPVDFKKLHEILEKSkKFEKNMLESMDDGRIKMYLTYkLLSLRKQLAEDFLKGEYKGLDLEEGLCGFIRFNKILVIIKTKGSVNYKLKLEEGAIYTDVLTGEEIKKEVQINELPRILVRM 720
                                    10        20      | 30        40        50        60        70        80        90       100    |  110|      120       130       140       150       160       170       180       190       200     | 210     | 220       230       240       250       260       270       280       290       300       310       320     | 330       340       350       360       370       380       390       400       410       420       430       440       450       460      |470       480       490       500   |   510  |    520       530       540       550       560       570       580       590       600       610     | 620       630       640       650       660       670       680       690       700       710       720
                                                     27-MLZ                                                                       105-MLZ |                                                                                            206-MLY   216-MLY                           250-MLY                                                     310-MLZ         326-MLZ                                                         390-MLY                                                                      467-MLZ                              504-MLY    |     |                                    558-MLY                                                   616-MLY               638-MLZ                                                                              
                                                                                                                                     108-MLZ                                                                                                                                                                                                                                                                                                                                                                                                         508-MLZ|     |                                                                                                                                                                                                         
                                                                                                                                      109-MLY                                                                                                                                                                                                                                                                                                                                                                                                             513-MLZ |                                                                                                                                                                                                         
                                                                                                                                        111-MLY                                                                                                                                                                                                                                                                                                                                                                                                                 519-MLZ

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1IV8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q53688_9CREN | Q53688)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Asymmetric/Biological Unit
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(no "Sites" information available for 1iv8)

	Cis Peptide Bonds
		Asp A:596 - Pro A:597	[ RasMol ]

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	1iv8
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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (2, 19)

Sites (0, 0)

SS Bonds (1, 1)

Cis Peptide Bonds (1, 1)

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Exons (0, 0)

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CATH Domains (5, 5)

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