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(-) Description

Title :  NMR STRUCTURE OF ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC) BOUND TO DPC MICELLES
 
Authors :  Z. O. Shenkarev, T. A. Balasheva, R. G. Efremov, Z. A. Yakimenko, T. V. Ovchinnikova, J. Raap, A. S. Arseniev
Date :  19 Apr 01  (Deposition) - 13 Feb 02  (Release) - 27 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Zrevamicin, Peptaibol Antibacterial, Antifungal, Antibiotic Bent Helix, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. O. Shenkarev, T. A. Balashova, R. G. Efremov, Z. A. Yakimenko, T. V. Ovchinnikova, J. Raap, A. S. Arseniev
Spatial Structure Of Zervamicin Iib Bound To Dpc Micelles: Implications For Voltage-Gating.
Biophys. J. V. 82 762 2002
PubMed-ID: 11806918  |  Reference-DOI: 10.1016/S0006-3495(02)75438-6

(-) Compounds

Molecule 1 - ZERVAMICIN IIB
    Chains: A
    Organism Scientific: EMERICELLOPSIS SALMOSYNNEMATA
    Organism Taxid: 118885
    Strain: 336 IMI 58330

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

NMR Structure (5, 9)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AIB4Mod. Amino AcidALPHA-AMINOISOBUTYRIC ACID
3DIV1Mod. Amino AcidD-ISOVALINE
4HYP2Mod. Amino Acid4-HYDROXYPROLINE
5PHL1Mod. Amino AcidL-PHENYLALANINOL
NMR Structure * (5, 9)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AIB4Mod. Amino AcidALPHA-AMINOISOBUTYRIC ACID
3DIV1Mod. Amino AcidD-ISOVALINE
4HYP2Mod. Amino Acid4-HYDROXYPROLINE
5PHL1Mod. Amino AcidL-PHENYLALANINOL

(-) Sites  (0, 0)

(no "Site" information available for 1IH9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IH9)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1IH9)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:17
                                                
               SCOP domains d1ih9a_ A:        SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                  1ih9 A  0 xWIQxITxLxpQxpxPx 16
                            |   |  | 9| ||| |
                            |   |  | || ||| |
                            0-ACE  | || ||| |
                                4-DIV|| ||| |
                                   7-AIB||| |
                                     9-AIB| |
                                     10-HYP |
                                       12-AIB
                                        13-HYP
                                         14-AIB
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1IH9)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1amt CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN
1dlz SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB
1ee7 SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES
1gq0 SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
1joh CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
1m24 CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E
1ob4 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A
1ob6 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B
1ob7 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C
1r9u SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL