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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE/NEUROLEUKIN/AUTOCRINE MOTILITY FACTOR/MATURATION FACTOR
 
Authors :  J. A. Read, J. Pearce, X. Li, H. Muirhead, J. Chirgwin, C. Davies
Date :  23 Mar 01  (Deposition) - 30 May 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Isomerase, Glycolysis Enzyme/Neurotrophic Growth Factor/Cytokine, Two Alpha/Beta Domains (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Read, J. Pearce, X. Li, H. Muirhead, J. Chirgwin, C. Davies
The Crystal Structure Of Human Phosphoglucose Isomerase At 1. 6 A Resolution: Implications For Catalytic Mechanism, Cytokine Activity And Haemolytic Anaemia.
J. Mol. Biol. V. 309 447 2001
PubMed-ID: 11371164  |  Reference-DOI: 10.1006/JMBI.2001.4680

(-) Compounds

Molecule 1 - PHOSPHOGLUCOSE ISOMERASE
    ChainsA
    EC Number5.3.1.9
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneGPI
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGLUCOSE-6-PHOSPHATE ISOMERASE, GLUCOSE PHOSPHATE ISOMERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1BME1Ligand/IonBETA-MERCAPTOETHANOL
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1BME2Ligand/IonBETA-MERCAPTOETHANOL
2SO44Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:159 , SER A:209 , LYS A:210 , THR A:211 , THR A:214 , BME A:601 , HOH A:627 , HOH A:747 , HOH A:925 , HOH A:973BINDING SITE FOR RESIDUE SO4 A 602
2AC2SOFTWAREARG A:27 , ASN A:46 , HIS A:47 , HOH A:985 , HOH A:1056 , HOH A:1070 , HOH A:1161BINDING SITE FOR RESIDUE SO4 A 603
3AC3SOFTWAREGLY A:158 , GLY A:271 , GLN A:353 , SO4 A:602 , HOH A:710 , HOH A:747 , HOH A:866 , HOH A:973BINDING SITE FOR RESIDUE BME A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IAT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:383 -Thr A:384

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (25, 25)

Asymmetric Unit (25, 25)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_002516T5IG6PI_HUMANDisease (HA-GPID)267606852AT4I
02UniProtVAR_002517H20PG6PI_HUMANDisease (HA-GPID)137853586AH19P
03UniProtVAR_002518R75GG6PI_HUMANDisease (HA-GPID)  ---AR74G
04UniProtVAR_002519R83WG6PI_HUMANDisease (HA-GPID)  ---AR82W
05UniProtVAR_002521V101MG6PI_HUMANDisease (HA-GPID)757341382AV100M
06UniProtVAR_002520G159SG6PI_HUMANDisease (HA-GPID)137853582AG158S
07UniProtVAR_002522T195IG6PI_HUMANDisease (HA-GPID)  ---AT194I
08UniProtVAR_018816I208TG6PI_HUMANPolymorphism8191371AI207T
09UniProtVAR_002523T224MG6PI_HUMANDisease (HA-GPID)61754634AT223M
10UniProtVAR_002524R273HG6PI_HUMANDisease (HA-GPID)  ---AR272H
11UniProtVAR_002525S278LG6PI_HUMANDisease (HA-GPID)34306618AS277L
12UniProtVAR_002526A300PG6PI_HUMANDisease (HA-GPID)  ---AA299P
13UniProtVAR_033943R308HG6PI_HUMANPolymorphism2230294AR307H
14UniProtVAR_002527L339PG6PI_HUMANDisease (HA-GPID)137853587AL338P
15UniProtVAR_002528Q343RG6PI_HUMANDisease (HA-GPID)267606851AQ342R
16UniProtVAR_002529R347CG6PI_HUMANDisease (HA-GPID)758132799AR346C
17UniProtVAR_002530R347HG6PI_HUMANDisease (HA-GPID)137853583AR346H
18UniProtVAR_002531T375RG6PI_HUMANDisease (HA-GPID)267606853AT374R
19UniProtVAR_002532H389RG6PI_HUMANDisease (HA-GPID)139382538AH388R
20UniProtVAR_002533R472HG6PI_HUMANDisease (HA-GPID)148811525AR471H
21UniProtVAR_002534L487FG6PI_HUMANDisease (HA-GPID)374583873AL486F
22UniProtVAR_002535E495KG6PI_HUMANDisease (HA-GPID)  ---AE494K
23UniProtVAR_002536L517VG6PI_HUMANDisease (HA-GPID)  ---AL516V
24UniProtVAR_002537I525TG6PI_HUMANDisease (HA-GPID)137853584AI524T
25UniProtVAR_002538D539NG6PI_HUMANDisease (HA-GPID)137853585AD538N

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (25, 50)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_002516T5IG6PI_HUMANDisease (HA-GPID)267606852AT4I
02UniProtVAR_002517H20PG6PI_HUMANDisease (HA-GPID)137853586AH19P
03UniProtVAR_002518R75GG6PI_HUMANDisease (HA-GPID)  ---AR74G
04UniProtVAR_002519R83WG6PI_HUMANDisease (HA-GPID)  ---AR82W
05UniProtVAR_002521V101MG6PI_HUMANDisease (HA-GPID)757341382AV100M
06UniProtVAR_002520G159SG6PI_HUMANDisease (HA-GPID)137853582AG158S
07UniProtVAR_002522T195IG6PI_HUMANDisease (HA-GPID)  ---AT194I
08UniProtVAR_018816I208TG6PI_HUMANPolymorphism8191371AI207T
09UniProtVAR_002523T224MG6PI_HUMANDisease (HA-GPID)61754634AT223M
10UniProtVAR_002524R273HG6PI_HUMANDisease (HA-GPID)  ---AR272H
11UniProtVAR_002525S278LG6PI_HUMANDisease (HA-GPID)34306618AS277L
12UniProtVAR_002526A300PG6PI_HUMANDisease (HA-GPID)  ---AA299P
13UniProtVAR_033943R308HG6PI_HUMANPolymorphism2230294AR307H
14UniProtVAR_002527L339PG6PI_HUMANDisease (HA-GPID)137853587AL338P
15UniProtVAR_002528Q343RG6PI_HUMANDisease (HA-GPID)267606851AQ342R
16UniProtVAR_002529R347CG6PI_HUMANDisease (HA-GPID)758132799AR346C
17UniProtVAR_002530R347HG6PI_HUMANDisease (HA-GPID)137853583AR346H
18UniProtVAR_002531T375RG6PI_HUMANDisease (HA-GPID)267606853AT374R
19UniProtVAR_002532H389RG6PI_HUMANDisease (HA-GPID)139382538AH388R
20UniProtVAR_002533R472HG6PI_HUMANDisease (HA-GPID)148811525AR471H
21UniProtVAR_002534L487FG6PI_HUMANDisease (HA-GPID)374583873AL486F
22UniProtVAR_002535E495KG6PI_HUMANDisease (HA-GPID)  ---AE494K
23UniProtVAR_002536L517VG6PI_HUMANDisease (HA-GPID)  ---AL516V
24UniProtVAR_002537I525TG6PI_HUMANDisease (HA-GPID)137853584AI524T
25UniProtVAR_002538D539NG6PI_HUMANDisease (HA-GPID)137853585AD538N

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 3)

Asymmetric Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P_GLUCOSE_ISOMERASE_3PS51463 Glucose-6-phosphate isomerase family profile.G6PI_HUMAN7-553  1A:6-552
2P_GLUCOSE_ISOMERASE_1PS00765 Phosphoglucose isomerase signature 1.G6PI_HUMAN268-281  1A:267-280
3P_GLUCOSE_ISOMERASE_2PS00174 Phosphoglucose isomerase signature 2.G6PI_HUMAN502-519  1A:501-518
Biological Unit 1 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P_GLUCOSE_ISOMERASE_3PS51463 Glucose-6-phosphate isomerase family profile.G6PI_HUMAN7-553  2A:6-552
2P_GLUCOSE_ISOMERASE_1PS00765 Phosphoglucose isomerase signature 1.G6PI_HUMAN268-281  2A:267-280
3P_GLUCOSE_ISOMERASE_2PS00174 Phosphoglucose isomerase signature 2.G6PI_HUMAN502-519  2A:501-518

(-) Exons   (18, 18)

Asymmetric Unit (18, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003564872aENSE00001416274chr19:34856069-34856293225G6PI_HUMAN1-41411A:1-4040
1.2fENST000003564872fENSE00000696364chr19:34857250-3485734091G6PI_HUMAN41-71311A:40-7031
1.3aENST000003564873aENSE00000696367chr19:34857688-3485775669G6PI_HUMAN72-94231A:71-9323
1.3dENST000003564873dENSE00000696369chr19:34859488-34859607120G6PI_HUMAN95-134401A:94-13340
1.5ENST000003564875ENSE00000696372chr19:34868408-3486849184G6PI_HUMAN135-162281A:134-16128
1.6ENST000003564876ENSE00000696374chr19:34868640-34868786147G6PI_HUMAN163-211491A:162-21049
1.7ENST000003564877ENSE00000696376chr19:34869839-3486991072G6PI_HUMAN212-235241A:211-23424
1.8ENST000003564878ENSE00000846293chr19:34870423-3487046745G6PI_HUMAN236-250151A:235-24915
1.9ENST000003564879ENSE00000846294chr19:34872371-3487242454G6PI_HUMAN251-268181A:250-26718
1.10bENST0000035648710bENSE00001184892chr19:34884153-3488421361G6PI_HUMAN269-289211A:268-28821
1.11aENST0000035648711aENSE00001184887chr19:34884633-3488467644G6PI_HUMAN289-303151A:288-30215
1.12ENST0000035648712ENSE00001184875chr19:34884819-34884971153G6PI_HUMAN304-354511A:303-35351
1.13ENST0000035648713ENSE00001184867chr19:34887206-34887335130G6PI_HUMAN355-398441A:354-39744
1.14ENST0000035648714ENSE00001184862chr19:34887486-3488756277G6PI_HUMAN398-423261A:397-42226
1.15ENST0000035648715ENSE00001184856chr19:34890112-34890240129G6PI_HUMAN424-466431A:423-46543
1.16ENST0000035648716ENSE00001184852chr19:34890461-3489053676G6PI_HUMAN467-492261A:466-49126
1.17ENST0000035648717ENSE00001184847chr19:34890624-3489069067G6PI_HUMAN492-514231A:491-51323
1.18bENST0000035648718bENSE00001423864chr19:34890806-34891236431G6PI_HUMAN514-558451A:513-55644

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:556
 aligned with G6PI_HUMAN | P06744 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:556
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551      
           G6PI_HUMAN     2 AALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARV 557
               SCOP domains d1iata_ A: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1iatA01 A:1-98,A:294-514 Glucose-6-phosphate isomerase like protein; domain 1                     1iatA02 A:99-293 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              1iatA01 A:1-98,A:294-514 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                1iatA03 A:515-555                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhheeeee....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhheeeee.hhhhhhhhh.hhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.... Sec.struct. author
             SAPs(SNPs) (1) ---I--------------P------------------------------------------------------G-------W-----------------M---------------------------------------------------------S-----------------------------------I------------T---------------M------------------------------------------------H----L---------------------P-------H------------------------------P---R---C---------------------------R-------------R----------------------------------------------------------------------------------H--------------F-------K---------------------V-------T-------------N------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                PROSITE (1) -----P_GLUCOSE_ISOMERASE_3  PDB: A:6-552 UniProt: 7-553                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS-------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2a  PDB: A:1-40 UniProt: 1-41    ------------------------------Exon 1.3a  PDB: A:71-93Exon 1.3d  PDB: A:94-133 UniProt: 95-134Exon 1.5  PDB: A:134-161    Exon 1.6  PDB: A:162-210 UniProt: 163-211        Exon 1.7  PDB: A:211-234Exon 1.8       Exon 1.9          Exon 1.10b           --------------Exon 1.12  PDB: A:303-353 UniProt: 304-354         Exon 1.13  PDB: A:354-397 UniProt: 355-398  -------------------------Exon 1.15  PDB: A:423-465 UniProt: 424-466 Exon 1.16  PDB: A:466-491 ---------------------Exon 1.18b  PDB: A:513-556 UniProt: 514-558  Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------Exon 1.2f  PDB: A:40-70        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11a     ----------------------------------------------------------------------------------------------Exon 1.14  PDB: A:397-422 --------------------------------------------------------------------Exon 1.17              ------------------------------------------- Transcript 1 (2)
                 1iat A   1 AALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARV 556
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (2, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1IAT)

(-) Gene Ontology  (35, 35)

Asymmetric Unit(hide GO term definitions)
Chain A   (G6PI_HUMAN | P06744)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0004347    glucose-6-phosphate isomerase activity    Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0016866    intramolecular transferase activity    Catalysis of the transfer of a functional group from one position to another within a single molecule.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0048029    monosaccharide binding    Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0046185    aldehyde catabolic process    The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0061621    canonical glycolysis    The glycolytic process that begins with the conversion of glucose to glucose-6-phosphate by glucokinase activity. Glycolytic processes are the chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0034101    erythrocyte homeostasis    Any process of regulating the production and elimination of erythrocytes within an organism.
    GO:0006094    gluconeogenesis    The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
    GO:0051156    glucose 6-phosphate metabolic process    The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6.
    GO:0042593    glucose homeostasis    Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0006959    humoral immune response    An immune response mediated through a body fluid.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0007611    learning or memory    The acquisition and processing of information and/or the storage and retrieval of this information over time.
    GO:0001707    mesoderm formation    The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.
    GO:0019242    methylglyoxal biosynthetic process    The chemical reactions and pathways resulting in the formation of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid.
    GO:0043154    negative regulation of cysteine-type endopeptidase activity involved in apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
    GO:0043524    negative regulation of neuron apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
cellular component
    GO:0060170    ciliary membrane    The portion of the plasma membrane surrounding a cilium.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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1dqr CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE, A GLYCOLYTIC ENZYME THAT MOONLIGHTS AS NEUROLEUKIN, AUTOCRINE MOTILITY FACTOR, AND DIFFERENTIATION MEDIATOR