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(-) Description

Title :  CRYSTAL STRUCTURE OF THE P1 DOMAIN OF CHEA FROM SALMONELLA TYPHIMURIUM
 
Authors :  L. Mourey, S. Da Re, J. -D. Pedelacq, T. Tolstyk, C. Faurie, V. Guillet, J. B. Stock, J. -P. Samama
Date :  28 Feb 01  (Deposition) - 11 Jul 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Four-Helix Bundle, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Mourey, S. Da Re, J. -D. Pedelacq, T. Tolstykh, C. Faurie, V. Guillet, J. B. Stock, J. -P. Samama
Crystal Structure Of The Chea Histidine Phosphotransfer Domain That Mediates Response Regulator Phosphorylation In Bacterial Chemotaxis
J. Biol. Chem. V. 276 31074 2001
PubMed-ID: 11387324  |  Reference-DOI: 10.1074/JBC.M101943200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CHEMOTAXIS PROTEIN CHEA
    ChainsA, B, C, D
    EC Number2.7.3.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentRESIDUES 1-138
    GeneCHEA
    Organism ScientificSALMONELLA TYPHIMURIUM
    Organism Taxid602

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1MSE17Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:45 , ARG A:77 , HOH A:201BINDING SITE FOR RESIDUE SO4 A 147

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1I5N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1I5N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1I5N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1I5N)

(-) Exons   (0, 0)

(no "Exon" information available for 1I5N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with CHEA_SALTY | P09384 from UniProtKB/Swiss-Prot  Length:671

    Alignment length:128
                                    13        23        33        43        53        63        73        83        93       103       113       123        
           CHEA_SALTY     4 DISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLALEAK 131
               SCOP domains d1i5na_ A: Chemotaxis protein CheA P1 domain                                                                                     SCOP domains
               CATH domains 1i5nA00 A:4-131  [code=1.20.120.160, no name defined]                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1i5n A   4 DISDFYQTFFDEADELLADmEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLmENLLDEARRGEmQLNTDIINLFLETKDImQEQLDAYKNSEEPDAASFEYICNALRQLALEAK 131
                                    13        23        33        43        53        63     |  73       |83        93    |  103       113       123        
                                              23-MSE                                        69-MSE      81-MSE           98-MSE                             

Chain B from PDB  Type:PROTEIN  Length:125
 aligned with CHEA_SALTY | P09384 from UniProtKB/Swiss-Prot  Length:671

    Alignment length:129
                                    12        22        32        42        52        62        72        82        92       102       112       122         
           CHEA_SALTY     3 MDISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLALEAK 131
               SCOP domains d1i5nb_ B: Chemotaxis protein     CheA P1 domain                                                                                  SCOP domains
               CATH domains -1i5nB00 B:4-131  [code=1.20.1    20.160, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh...----hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1i5n B   3 mDISDFYQTFFDEADELLADmEQHLLDLVP----AEQLNAIFRAAHSIKGGAGTFGFTILQETTHLmENLLDEARRGEmQLNTDIINLFLETKDImQEQLDAYKNSEEPDAASFEYICNALRQLALEAK 131
                            |       12        22|       32    |   42        52        62      | 72        82        92     | 102       112       122         
                            3-MSE              23-MSE   32   37                              69-MSE      81-MSE           98-MSE                             

Chain C from PDB  Type:PROTEIN  Length:125
 aligned with CHEA_SALTY | P09384 from UniProtKB/Swiss-Prot  Length:671

    Alignment length:125
                                    14        24        34        44        54        64        74        84        94       104       114       124     
           CHEA_SALTY     5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLALE 129
               SCOP domains d1i5nc_ C: Chemotaxis protein CheA P1 domain                                                                                  SCOP domains
               CATH domains 1i5nC00 C:5-129  [code=1.20.120.160, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1i5n C   5 ISDFYQTFFDEADELLADmEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLmENLLDEARRGEmQLNTDIINLFLETKDImQEQLDAYKNSEEPDAASFEYICNALRQLALE 129
                                    14        24        34        44        54        64    |   74      | 84        94   |   104       114       124     
                                             23-MSE                                        69-MSE      81-MSE           98-MSE                           

Chain D from PDB  Type:PROTEIN  Length:129
 aligned with CHEA_SALTY | P09384 from UniProtKB/Swiss-Prot  Length:671

    Alignment length:129
                                    14        24        34        44        54        64        74        84        94       104       114       124         
           CHEA_SALTY     5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLALEAKGE 133
               SCOP domains d1i5nd_ D: Chemotaxis protein CheA P1 domain                                                                                      SCOP domains
               CATH domains 1i5nD00 D:5-133  [code=1.20.120.160, no name defined]                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1i5n D   5 ISDFYQTFFDEADELLADmEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLmENLLDEARRGEmQLNTDIINLFLETKDImQEQLDAYKNSEEPDAASFEYICNALRQLALEAKGE 133
                                    14        24        34        44        54        64    |   74      | 84        94   |   104       114       124         
                                             23-MSE                                        69-MSE      81-MSE           98-MSE                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1I5N)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (CHEA_SALTY | P09384)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0004673    protein histidine kinase activity    Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0018106    peptidyl-histidine phosphorylation    The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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