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(-) Description

Title :  HISTONE-LIKE PROTEIN
 
Authors :  H. Vis, M. Mariani, C. E. Vorgias, K. S. Wilson, R. Kaptein, R. Boelens
Date :  26 May 95  (Deposition) - 15 Oct 95  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (25x)
Keywords :  Dna-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Vis, M. Mariani, C. E. Vorgias, K. S. Wilson, R. Kaptein, R. Boelens
Solution Structure Of The Hu Protein From Bacillus Stearothermophilus.
J. Mol. Biol. V. 254 692 1995
PubMed-ID: 7500343  |  Reference-DOI: 10.1006/JMBI.1995.0648
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HU PROTEIN
    Chains: A, B
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  
NMR Structure (25x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1HUE)

(-) Sites  (0, 0)

(no "Site" information available for 1HUE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HUE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HUE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HUE)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HISTONE_LIKEPS00045 Bacterial histone-like DNA-binding proteins signature.DBH_GEOSE46-65
 		  2A:46-65
B:46-65

(-) Exons   (0, 0)

(no "Exon" information available for 1HUE)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with DBH_GEOSE | P0A3H0 from UniProtKB/Swiss-Prot  Length:90

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
             DBH_GEOSE    1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
               SCOP domains d1huea_ A: HU protein                                                                      SCOP domains
               CATH domains 1hueA00 A:1-90 HU Protein, subunit A                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.............eee.....eee......eee.....eee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------HISTONE_LIKE        ------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  1hue A  1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
                                    10        20        30        40        50        60        70        80        90


Chain B from PDB  Type:PROTEIN  Length:90
 aligned with DBH_GEOSE | P0A3H0 from UniProtKB/Swiss-Prot  Length:90

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
             DBH_GEOSE    1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
               SCOP domains d1hueb_ B: HU protein                                                                      SCOP domains
               CATH domains 1hueB00 B:1-90 HU Protein, subunit A                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..........eeeeee...eee........eee...eeeeee...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------HISTONE_LIKE        ------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  1hue B  1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Few Secondary Structures (1120)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HUE)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A,B   (DBH_GEOSE | P0A3H0)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0030261    chromosome condensation    The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.

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  1hue
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DBH_GEOSE | P0A3H0: 1huu

(-) Related Entries Specified in the PDB File

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