1HHU - JenaLib

Title :   BALHIMYCIN IN COMPLEX WITH D-ALA-D-ALA

Authors :   C. Lehmann, G. Bunkoczi, G. M. Sheldrick, L. Vertessy

Date :   28 Dec 00 (Deposition) - 05 Sep 03 (Release) - 06 Feb 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   0.89

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Antibiotic, Glycopeptide, Cell Wall Peptides (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Lehmann, G. Bunkoczi, L. Vertesy, G. M. Sheldrick
Structures Of Glycopeptide Antibiotics With Peptides That Model Bacterial Cell-Wall Precursors
J. Mol. Biol. V. 318 723 2002
PubMed-ID: 12054818 | Reference-DOI: 10.1016/S0022-2836(02)00146-8

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (10, 47)

Asymmetric Unit (10, 47)

No.	Name	Count	Type	Full Name
1	3FG	4	Mod. Amino Acid	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	BGC	4	Ligand/Ion	BETA-D-GLUCOSE
3	CIT	5	Ligand/Ion	CITRIC ACID
4	DAL	8	Ligand/Ion	D-ALANINE
5	DVC	4	Ligand/Ion	(2R,4S,6S)-4-AZANYL-4,6-DIMETHYL-OXANE-2,5,5-TRIOL
6	GHP	8	Mod. Amino Acid	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
7	MLU	4	Mod. Amino Acid	N-METHYL-D-LEUCINE
8	MPD	2	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
9	OMY	4	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
10	OMZ	4	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE

Biological Unit 1 (10, 25)

No.	Name	Count	Type	Full Name
1	3FG	2	Mod. Amino Acid	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
3	CIT	4	Ligand/Ion	CITRIC ACID
4	DAL	4	Ligand/Ion	D-ALANINE
5	DVC	2	Ligand/Ion	(2R,4S,6S)-4-AZANYL-4,6-DIMETHYL-OXANE-2,5,5-TRIOL
6	GHP	4	Mod. Amino Acid	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
7	MLU	2	Mod. Amino Acid	N-METHYL-D-LEUCINE
8	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
9	OMY	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
10	OMZ	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE

Biological Unit 2 (10, 22)

No.	Name	Count	Type	Full Name
1	3FG	2	Mod. Amino Acid	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
3	CIT	1	Ligand/Ion	CITRIC ACID
4	DAL	4	Ligand/Ion	D-ALANINE
5	DVC	2	Ligand/Ion	(2R,4S,6S)-4-AZANYL-4,6-DIMETHYL-OXANE-2,5,5-TRIOL
6	GHP	4	Mod. Amino Acid	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
7	MLU	2	Mod. Amino Acid	N-METHYL-D-LEUCINE
8	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
9	OMY	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
10	OMZ	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE

Sites (19, 19)

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GHP A:4 , DAL A:12 , CIT A:1015 , CIT A:1016 , CIT A:1018 , GHP C:5	BINDING SITE FOR RESIDUE DAL A 11
02	AC2	SOFTWARE	MLU A:1 , OMZ A:2 , ASN A:3 , GHP A:4 , DAL A:11 , CIT A:1016 , HOH A:2034 , HOH A:2035	BINDING SITE FOR RESIDUE DAL A 12
03	AC3	SOFTWARE	CIT A:1015 , CIT A:1017 , GHP B:4 , DAL B:12 , CIT B:1015 , GHP D:5	BINDING SITE FOR RESIDUE DAL B 11
04	AC4	SOFTWARE	CIT A:1017 , MLU B:1 , OMZ B:2 , ASN B:3 , GHP B:4 , DAL B:11 , HOH B:2032	BINDING SITE FOR RESIDUE DAL B 12
05	AC5	SOFTWARE	GHP A:5 , CIT A:1015 , CIT A:1017 , CIT B:1015 , MLU C:1 , GHP C:4 , DAL C:12	BINDING SITE FOR RESIDUE DAL C 11
06	AC6	SOFTWARE	MLU C:1 , OMZ C:2 , ASN C:3 , GHP C:4 , DAL C:11 , HOH C:2021 , HOH C:2022	BINDING SITE FOR RESIDUE DAL C 12
07	AC7	SOFTWARE	CIT A:1015 , CIT A:1016 , CIT A:1018 , GHP B:5 , MLU D:1 , GHP D:4 , DAL D:12	BINDING SITE FOR RESIDUE DAL D 11
08	AC8	SOFTWARE	MLU D:1 , OMZ D:2 , ASN D:3 , GHP D:4 , DAL D:11 , HOH D:2021	BINDING SITE FOR RESIDUE DAL D 12
09	AC9	SOFTWARE	MLU A:1 , DAL A:11 , CIT A:1016 , CIT A:1017 , CIT A:1018 , HOH A:2036 , HOH A:2047 , MLU B:1 , DAL B:11 , DAL C:11 , DAL D:11	BINDING SITE FOR RESIDUE CIT A1015
10	BC1	SOFTWARE	MLU A:1 , DAL A:11 , DAL A:12 , CIT A:1015 , CIT A:1018 , HOH A:2037 , HOH A:2038 , HOH A:2039 , HOH A:2040 , HOH A:2041 , GHP D:5 , OMY D:6 , DAL D:11 , HOH D:2009 , HOH D:2012	BINDING SITE FOR RESIDUE CIT A1016
11	BC2	SOFTWARE	CIT A:1015 , HOH A:2042 , HOH A:2043 , HOH A:2044 , MLU B:1 , DAL B:11 , DAL B:12 , CIT B:1015 , GHP C:5 , OMY C:6 , DAL C:11 , HOH C:2013 , HOH C:2017	BINDING SITE FOR RESIDUE CIT A1017
12	BC3	SOFTWARE	GHP A:5 , OMY A:6 , DAL A:11 , CIT A:1015 , CIT A:1016 , HOH A:2040 , HOH A:2041 , HOH A:2045 , HOH A:2046 , HOH A:2047 , MLU D:1 , DAL D:11	BINDING SITE FOR RESIDUE CIT A1018
13	BC4	SOFTWARE	CIT A:1017 , GHP B:5 , OMY B:6 , DAL B:11 , HOH B:2019 , HOH B:2024 , MLU C:1 , DAL C:11	BINDING SITE FOR RESIDUE CIT B1015
14	BC5	SOFTWARE	OMZ C:2	BINDING SITE FOR RESIDUE MPD B1016
15	BC6	SOFTWARE	HOH A:2037	BINDING SITE FOR RESIDUE MPD A1019
16	BC7	SOFTWARE	DAL A:11 , DAL A:12 , CIT A:1015 , CIT A:1016 , CIT A:1018 , HOH A:2003 , HOH A:2006 , HOH A:2007 , HOH A:2008 , HOH A:2013 , HOH A:2022 , HOH A:2023 , HOH A:2024 , ASN C:3 , GHP C:5 , DAL C:11 , OMZ D:2 , ASN D:3 , GHP D:4 , GHP D:5 , OMY D:6	BINDING SITE FOR CHAIN A OF BALHIMYCIN
17	BC8	SOFTWARE	CIT A:1015 , CIT A:1017 , HOH A:2022 , HOH A:2023 , DAL B:11 , DAL B:12 , CIT B:1015 , HOH B:2002 , HOH B:2007 , HOH B:2008 , HOH B:2011 , HOH B:2012 , HOH B:2013 , HOH B:2018 , OMZ C:2 , ASN C:3 , GHP C:4 , GHP C:5 , OMY C:6 , ASN D:3 , GHP D:5 , DAL D:11	BINDING SITE FOR CHAIN B OF BALHIMYCIN
18	BC9	SOFTWARE	ASN A:3 , GHP A:5 , DAL A:11 , CIT A:1017 , HOH A:2012 , OMZ B:2 , ASN B:3 , GHP B:4 , GHP B:5 , OMY B:6 , CIT B:1015 , MPD B:1016 , HOH B:2009 , HOH B:2029 , DAL C:11 , DAL C:12 , HOH C:2001 , HOH C:2002 , HOH C:2003 , HOH C:2004 , HOH C:2005 , HOH C:2006 , HOH C:2009 , HOH C:2012	BINDING SITE FOR CHAIN C OF BALHIMYCIN
19	CC1	SOFTWARE	OMZ A:2 , ASN A:3 , GHP A:4 , GHP A:5 , OMY A:6 , CIT A:1016 , CIT A:1018 , HOH A:2012 , ASN B:3 , GHP B:5 , DAL B:11 , HOH B:2009 , DAL D:11 , DAL D:12 , HOH D:2001 , HOH D:2003 , HOH D:2004 , HOH D:2005 , HOH D:2008	BINDING SITE FOR CHAIN D OF BALHIMYCIN

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hhu A 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG

Chain B from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hhu B 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG

Chain C from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hhu C 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG

Chain D from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hhu D 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

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