1HH3 - JenaLib

Title :   DECAPLANIN FIRST P21-FORM

Authors :   C. Lehmann, L. Vertesy, G. M. Sheldrick, Z. Dauter, M. Dauter

Date :   19 Dec 00 (Deposition) - 11 Jul 05 (Release) - 01 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Antibiotic, Glycopeptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Lehmann, J. E. Debreczeni, G. Bunkoczi, M. Dauter, Z. Dauter, L. Vertesy, G. M. Sheldrick
Structures Of Four Crystal Forms Of Decaplanin
Helv. Chim. Acta V. 86 1478 2003
PubMed: search | Reference-DOI: 10.1002/HLCA.200390131

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 39)

Asymmetric Unit (9, 39)

No.	Name	Count	Type	Full Name
1	3FG	4	Mod. Amino Acid	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	BGC	4	Ligand/Ion	BETA-D-GLUCOSE
3	ERE	4	Ligand/Ion	(1R,3S,4R,5S)-3-AMINO-2,3,6-TRIDEOXY-3-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSE
4	GHP	8	Mod. Amino Acid	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5	GOL	3	Ligand/Ion	GLYCEROL
6	MLU	4	Mod. Amino Acid	N-METHYL-D-LEUCINE
7	OMX	4	Mod. Amino Acid	(BETAR)-BETA-HYDROXY-L-TYROSINE
8	OMZ	4	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
9	RAM	4	Ligand/Ion	ALPHA-L-RHAMNOSE

Biological Unit 1 (9, 20)

No.	Name	Count	Type	Full Name
1	3FG	2	Mod. Amino Acid	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
3	ERE	2	Ligand/Ion	(1R,3S,4R,5S)-3-AMINO-2,3,6-TRIDEOXY-3-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSE
4	GHP	4	Mod. Amino Acid	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5	GOL	2	Ligand/Ion	GLYCEROL
6	MLU	2	Mod. Amino Acid	N-METHYL-D-LEUCINE
7	OMX	2	Mod. Amino Acid	(BETAR)-BETA-HYDROXY-L-TYROSINE
8	OMZ	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
9	RAM	2	Ligand/Ion	ALPHA-L-RHAMNOSE

Biological Unit 2 (9, 19)

No.	Name	Count	Type	Full Name
1	3FG	2	Mod. Amino Acid	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
3	ERE	2	Ligand/Ion	(1R,3S,4R,5S)-3-AMINO-2,3,6-TRIDEOXY-3-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSE
4	GHP	4	Mod. Amino Acid	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5	GOL	1	Ligand/Ion	GLYCEROL
6	MLU	2	Mod. Amino Acid	N-METHYL-D-LEUCINE
7	OMX	2	Mod. Amino Acid	(BETAR)-BETA-HYDROXY-L-TYROSINE
8	OMZ	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
9	RAM	2	Ligand/Ion	ALPHA-L-RHAMNOSE

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MLU B:1 , OMZ B:2 , GHP B:4 , HOH B:2007 , HOH B:2042 , HOH B:2043 , HOH B:2044 , GHP D:5 , 3FG D:7	BINDING SITE FOR RESIDUE GOL B1001
2	AC2	SOFTWARE	GHP A:5 , OMX A:6 , HOH A:2024 , ASN B:3 , HOH B:2046 , HOH B:2047 , 3FG C:7 , MLU D:1	BINDING SITE FOR RESIDUE GOL B1002
3	AC3	SOFTWARE	GHP B:5 , 3FG B:7 , MLU D:1 , OMZ D:2 , HOH D:2001 , HOH D:2011 , HOH D:2032 , HOH D:2033	BINDING SITE FOR RESIDUE GOL D1003
4	AC4	SOFTWARE	HOH A:2001 , HOH A:2002 , HOH A:2009 , HOH A:2010 , HOH A:2011 , HOH A:2014 , HOH A:2023 , HOH A:2025 , HOH A:2026 , HOH A:2028 , HOH A:2029 , HOH A:2030 , HOH A:2031 , HOH A:2032 , ASN B:3 , GHP B:4 , GHP B:5 , OMX B:6 , GOL B:1002 , MLU C:1 , OMZ C:2 , ASN C:3 , GHP C:5 , GHP D:5	BINDING SITE FOR CHAIN A OF DECAPLANIN
5	AC5	SOFTWARE	ASN A:3 , GHP A:4 , GHP A:5 , OMX A:6 , GOL B:1001 , GOL B:1002 , HOH B:2001 , HOH B:2002 , HOH B:2006 , HOH B:2007 , HOH B:2008 , HOH B:2011 , HOH B:2012 , HOH B:2020 , HOH B:2021 , HOH B:2022 , HOH B:2023 , HOH B:2024 , HOH B:2025 , HOH B:2026 , HOH B:2028 , MLU C:1 , MLU D:1 , ASN D:3 , GHP D:5 , OMX D:6 , 3FG D:7 , GOL D:1003 , HOH D:2006 , HOH D:2011 , HOH D:2013 , HOH D:2018 , HOH D:2032	BINDING SITE FOR CHAIN B OF DECAPLANIN
6	AC6	SOFTWARE	ASN A:3 , GHP A:4 , GHP A:5 , 3FG A:7 , HOH A:2023 , HOH A:2024 , GHP B:5 , GOL B:1002 , HOH B:2020 , HOH B:2022 , HOH B:2023 , HOH C:2001 , HOH C:2009 , HOH C:2010 , HOH C:2011 , HOH C:2012 , HOH C:2022 , HOH C:2024 , HOH C:2025 , HOH C:2026 , HOH C:2027 , HOH C:2028 , HOH C:2029 , HOH C:2030 , OMZ D:2 , ASN D:3 , GHP D:4 , GHP D:5 , OMX D:6	BINDING SITE FOR CHAIN C OF DECAPLANIN
7	AC7	SOFTWARE	3FG A:7 , HOH A:2029 , HOH A:2032 , MLU B:1 , ASN B:3 , GHP B:5 , OMX B:6 , 3FG B:7 , GOL B:1001 , GOL B:1002 , HOH B:2011 , HOH B:2012 , HOH B:2042 , HOH B:2046 , OMZ C:2 , ASN C:3 , GHP C:4 , GHP C:5 , OMX C:6 , HOH C:2024 , HOH C:2032 , GOL D:1003 , HOH D:2001 , HOH D:2005 , HOH D:2006 , HOH D:2011 , HOH D:2012 , HOH D:2013 , HOH D:2014 , HOH D:2015 , HOH D:2016 , HOH D:2017 , HOH D:2018 , HOH D:2019	BINDING SITE FOR CHAIN D OF DECAPLANIN

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hh3 A 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMX
                                  7-3FG

Chain B from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hh3 B 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMX
                                  7-3FG

Chain C from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hh3 C 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMX
                                  7-3FG

Chain D from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1hh3 D 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMX
                                  7-3FG

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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