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(-) Description

Title :  FILAMENTOUS BACTERIOPHAGE PH75
 
Authors :  D. M. Pederson, L. C. Welsh, D. A. Marvin, M. Sampson, R. N. Perham, M. Yu, M. R. Slater
Date :  17 Dec 00  (Deposition) - 01 Jun 01  (Release) - 24 Feb 09  (Revision)
Method :  FIBER DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (35x)
Keywords :  Virus, Virus Coat Protein, Helical Virus Coat Protein, Ssdna Viruses, Inovirus, Filamentous Bacteriophage, Thermophiles, Membrane Proteins, Helical Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Pederson, L. C. Welsh, D. A. Marvin, M. Sampson, R. N. Perham, M. Yu, M. R. Slater
The Protein Capsid Of Filamentous Bacteriophage Ph75 From Thermus Thermophilus
J. Mol. Biol. V. 309 401 2001
PubMed-ID: 11371161  |  Reference-DOI: 10.1006/JMBI.2001.4685
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PH75 INOVIRUS MAJOR COAT PROTEIN
    Chains: A
    Organism Common: INOVIRUS PH75
    Organism Scientific: BACTERIOPHAGE PH75
    Organism Taxid: 144736
    Other Details: MAJOR COAT PROTEIN ASSEMBLY
    Other Details - Source: GROWN IN THERMUS THERMOPHILUS
    Synonym: PH75 BACTERIOPHAGE MAJOR COAT PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (35x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:46
 aligned with CAPSD_BPH75 | P82889 from UniProtKB/Swiss-Prot  Length:46

    Alignment length:46
                                    10        20        30        40      
           CAPSD_BPH75    1 MDFNPSEVASQVTNYIQAIAAAGVGVLALAIGLSAAWKYAKRFLKG 46
               SCOP domains d1hh0a_ A:                                     SCOP domains
               CATH domains 1hh0A00 A:1-46                                 CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                  1hh0 A  1 MDFNPSEVASQVTNYIQAIAAAGVGVLALAIGLSAAWKYAKRFLKG 46
                                    10        20        30        40
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HH0)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (CAPSD_BPH75 | P82889)
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BPH75 | P82889: 1hgv 1hgz

(-) Related Entries Specified in the PDB File

1hgv FILAMENTOUS BACTERIOPHAGE PH75 PDB PDB ENTRIES 1IFI THROUGH 1IFP ARE ALL RELATED INOVIRUS FIBER DIFFRACTION STUDIES.
1hgz FILAMENTOUS BACTERIOPHAGE PH75
1ifn
1ifp INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF3 MAJOR COATPROTEIN ASSEMBLY
1pfi
1ql1 INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY
1ql2 INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY
2ifm
2ifn
3ifm
4ifm