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(-) Description

Title :  THE STRUCTURE OF THE MACROPHAGE MIGRATION INHIBITORY FACTOR FROM TRICHINELLA SPIRALIS.
 
Authors :  S. M. Roe, D. J. Meyer
Date :  07 Dec 00  (Deposition) - 30 Aug 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Tautomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. H. Tan, S. A. Edgerton, R. Kumari, M. S. Mcalister, S. M. Rowe, S. Nagl, L. H. Pearl, M. E. Selkirk, A. E. Bianco, N. F. Totty, C. Engwerda, C. A. Gray, D. J. Meyer
Macrophage Migration Inhibitory Factor Of The Parasitic Nematode Trichinella Spiralis
Biochem. J. V. 357 373 2001
PubMed-ID: 11439086  |  Reference-DOI: 10.1042/0264-6021:3570373

(-) Compounds

Molecule 1 - MIGRATION INHIBITORY FACTOR
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: JM109
    Expression System Taxid: 562
    Organism Common: TRICHINA
    Organism Scientific: TRICHINELLA SPIRALIS
    Organism Taxid: 6334

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1HFO)

(-) Sites  (0, 0)

(no "Site" information available for 1HFO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HFO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HFO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HFO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1HFO)

(-) Exons   (0, 0)

(no "Exon" information available for 1HFO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with MIFH_TRISP | P81529 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           MIFH_TRISP     2 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114
               SCOP domains d1hfoa_ A: Microphage migration inhibition factor (MIF)                                                           SCOP domains
               CATH domains 1hfoA00 A:1-113 Macrophage Migration Inhibitory Factor                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1hfo A   1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain B from PDB  Type:PROTEIN  Length:113
 aligned with MIFH_TRISP | P81529 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           MIFH_TRISP     2 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114
               SCOP domains d1hfob_ B: Microphage migration inhibition factor (MIF)                                                           SCOP domains
               CATH domains 1hfoB00 B:1-113 Macrophage Migration Inhibitory Factor                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeeee......hhhhhhhhhhhhhhhhhh.hhh.eeeeeeeehhh.eee..ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1hfo B   1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain C from PDB  Type:PROTEIN  Length:113
 aligned with MIFH_TRISP | P81529 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           MIFH_TRISP     2 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114
               SCOP domains d1hfoc_ C: Microphage migration inhibition factor (MIF)                                                           SCOP domains
               CATH domains 1hfoC00 C:1-113 Macrophage Migration Inhibitory Factor                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee.......hhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1hfo C   1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain D from PDB  Type:PROTEIN  Length:113
 aligned with MIFH_TRISP | P81529 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           MIFH_TRISP     2 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114
               SCOP domains d1hfod_ D: Microphage migration inhibition factor (MIF)                                                           SCOP domains
               CATH domains 1hfoD00 D:1-113 Macrophage Migration Inhibitory Factor                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhh..hhhh.eeeee...eeee.......eeeeeee.......hhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1hfo D   1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain E from PDB  Type:PROTEIN  Length:113
 aligned with MIFH_TRISP | P81529 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           MIFH_TRISP     2 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114
               SCOP domains d1hfoe_ E: Microphage migration inhibition factor (MIF)                                                           SCOP domains
               CATH domains 1hfoE00 E:1-113 Macrophage Migration Inhibitory Factor                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1hfo E   1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain F from PDB  Type:PROTEIN  Length:113
 aligned with MIFH_TRISP | P81529 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           MIFH_TRISP     2 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114
               SCOP domains d1hfof_ F: Microphage migration inhibition factor (MIF)                                                           SCOP domains
               CATH domains 1hfoF00 F:1-113 Macrophage Migration Inhibitory Factor                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1hfo F   1 PIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HFO)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MIFH_TRISP | P81529)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0004167    dopachrome isomerase activity    Catalysis of the reaction: L-dopachrome = 5,6-dihydroxyindole-2-carboxylate.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0050178    phenylpyruvate tautomerase activity    Catalysis of the reaction: keto-phenylpyruvate = enol-phenylpyruvate.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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