1HF9 - JenaLib

NMR Structure - model 1 (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Title :   C-TERMINAL COILED-COIL DOMAIN FROM BOVINE IF1

Authors :   D. J. Gordon-Smith, R. J. Carbajo, J. -C. Yang, H. Videler, M. J. Runswick, J. E. Walker, D. Neuhaus

Date :   30 Nov 00 (Deposition) - 31 May 01 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (35x)

Keywords :   Atpase Inhibitor, F1 Atpase Inhibitor, Mitochondrion, Transit Peptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. J. Gordon-Smith, R. J. Carbajo, J. -C. Yang, H. Videler, M. J. Runswick, J. E. Walker, D. Neuhaus
Solution Structure Of A C-Terminal Coiled-Coil Domain From Bovine If1- The Inhibitor Protein Of F1 Atpase
J. Mol. Biol. V. 308 325 2001
PubMed-ID: 11327770 | Reference-DOI: 10.1006/JMBI.2001.4570

Molecule 1 - ATPASE INHIBITOR (MITOCHONDRIAL)
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	C41(DE3)
	Expression System Vector	:	PMW172
	Expression System Vector Type	:	PET
	Fragment	:	C-TERMINAL DOMAIN (44-84)
	Organ	:	HEART
	Organelle	:	MITOCHONDRIA
	Organism Common	:	COW
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	IF1


NMR Structure (35x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1HF9)

(no "Site" information available for 1HF9)

(no "SS Bond" information available for 1HF9)

(no "Cis Peptide Bond" information available for 1HF9)

(no "SAP(SNP)/Variant" information available for 1HF9)

(no "PROSITE Motif" information available for 1HF9)

NMR Structure (1, 2)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000008319	1	ENSBTAE00000067171	chr2:129321308-129321213	96	ATIF1_BOVIN	1-29	29	0	-	-
1.2	ENSBTAT00000008319	2	ENSBTAE00000300991	chr2:129321111-129321020	92	ATIF1_BOVIN	30-60	31	0	-	-
1.3	ENSBTAT00000008319	3	ENSBTAE00000067180	chr2:129319329-129319059	271	ATIF1_BOVIN	60-109	50	2	A:1-41 B:1-41	41 41

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:41
 aligned with ATIF1_BOVIN | P01096 from UniProtKB/Swiss-Prot  Length:109

    Alignment length:41
                                    78        88        98       108 
          ATIF1_BOVIN    69 ALKKHHENEISHHAKEIERLQKEIERHKQSIKKLKQSEDDD 109
               SCOP domains d1hf9a_ A:                                SCOP domains
               CATH domains 1hf9A00 A:1-41 Single helix bin           CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: A:1-41 UniProt: 60-109     Transcript 1
                 1hf9 A   1 ALKKHHENEISHHAKEIERLQKEIERHKQSIKKLKQSEDDD  41
                                    10        20        30        40

Chain B from PDB  Type:PROTEIN  Length:41
 aligned with ATIF1_BOVIN | P01096 from UniProtKB/Swiss-Prot  Length:109

    Alignment length:41
                                    78        88        98       108 
          ATIF1_BOVIN    69 ALKKHHENEISHHAKEIERLQKEIERHKQSIKKLKQSEDDD 109
               SCOP domains d1hf9b_ B:                                SCOP domains
               CATH domains 1hf9B00 B:1-41 Single helix bin           CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: B:1-41 UniProt: 60-109     Transcript 1
                 1hf9 B   1 ALKKHHENEISHHAKEIERLQKEIERHKQSIKKLKQSEDDD  41
                                    10        20        30        40

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Coiled coil proteins (689)

Fold: Antiparallel coiled-coil (45)

Superfamily: F1 ATPase inhibitor, IF1, C-terminal domain (4)

Family: F1 ATPase inhibitor, IF1, C-terminal domain (4)

Protein domain: F1 ATPase inhibitor, IF1, C-terminal domain (3)

Cow (Bos taurus) [TaxId: 9913] (3)

1a	d1hf9a_	A:
1b	d1hf9b_	B:

NMR Structure

Classes(

)

Architectures( (-)

)

Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Single alpha-helices involved in coiled-coils or other helix-helix interfaces (552)

Homologous Superfamily: Single helix bin (4)

Cow (Bos taurus) (2)

1a	1hf9A00	A:1-41
1b	1hf9B00	B:1-41

(no "Pfam Domain" information available for 1HF9)

NMR Structure(hide GO term definitions)

Chain A,B (ATIF1_BOVIN | P01096)

molecular function
	GO:0030272	5-formyltetrahydrofolate cyclo-ligase activity	Catalysis of the reaction: 5-formyltetrahydrofolate + ATP = 5,10-methenyltetrahydrofolate + ADP + H(+) + phosphate.
	GO:0051117	ATPase binding	Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
	GO:0042030	ATPase inhibitor activity	Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of ATP to ADP and orthophosphate.
	GO:0043532	angiostatin binding	Interacting selectively and non-covalently with angiostatin, a proteolytic product of plasminogen or plasmin containing at least one intact kringle domain, and which is an inhibitor of angiogenesis.
	GO:0005516	calmodulin binding	Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0030218	erythrocyte differentiation	The process in which a myeloid precursor cell acquires specializes features of an erythrocyte.
	GO:0009396	folic acid-containing compound biosynthetic process	The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
	GO:0006783	heme biosynthetic process	The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
	GO:0032780	negative regulation of ATPase activity	Any process that stops or reduces the rate of ATP hydrolysis by an ATPase.
	GO:0001937	negative regulation of endothelial cell proliferation	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation.
	GO:0051346	negative regulation of hydrolase activity	Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds.
	GO:0051260	protein homooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
	GO:0035999	tetrahydrofolate interconversion	The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

NMR Structure
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	ATIF1_BOVIN \| P01096	:	1gmj 1ohh 2v7q 4tsf 4tt3 4z1m 5lqx 5lqy 5lqz

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Description

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Exons (1, 2)

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