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(-) Description

Title :  MOLYBDATE BOUND COMPLEX OF DIMOP DOMAIN OF MODE FROM E.COLI
 
Authors :  D. G. Gourley, W. N. Hunter
Date :  19 Mar 01  (Deposition) - 19 Jun 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. G. Gourley, A. W. Schuttelkopf, L. A. Anderson, N. C. Price, D. H. Boxer, W. N. Hunter
Oxyanion Binding Alters Conformational And Quaternary Structure Of The C-Terminal Domain Of The Transcriptional Regulator Mode; Implications For Molybdate-Dependant Regulation, Signalling, Storage And Transport
J. Biol. Chem. V. 276 20641 2001
PubMed-ID: 11259434  |  Reference-DOI: 10.1074/JBC.M100919200

(-) Compounds

Molecule 1 - MOLYBDENUM TRANSPORT PROTEIN MODE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: MOLYBDATE BINDING DOMAIN RESIDUES 123-260
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MOO2Ligand/IonMOLYBDATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:126 , ALA A:127 , ARG A:128 , LYS A:183 , ALA A:184 , PRO A:185 , HOH A:2097 , THR B:163 , SER B:166BINDING SITE FOR RESIDUE MOO A1261
2AC2SOFTWAREILE A:162 , THR A:163 , SER A:166 , SER B:126 , ALA B:127 , ARG B:128 , LYS B:183 , ALA B:184 , PRO B:185 , HOH B:2109BINDING SITE FOR RESIDUE MOO B1261

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H9S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H9S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H9S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H9S)

(-) Exons   (0, 0)

(no "Exon" information available for 1H9S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
 aligned with MODE_ECO57 | P0A9G9 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:138
                                   132       142       152       162       172       182       192       202       212       222       232       242       252        
           MODE_ECO57   123 LQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
               SCOP domains d1h9sa1 A:123-199                                                            d1h9sa2 A:200-260                                             SCOP domains
               CATH domains 1h9sA02 A:123-183,A:252-260                                  1h9sA01 A:184-251  [code=2.40.50.100, no name defined]              1h9sA02   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeee.....eeeeeeee.....eeeeeeehhhhhhhh.....eeeeeehhhhheee.hhhhhhhh.eeeeeeeeeeee...eeeeeeee...eeeeeeee.hhh.......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1h9s A 123 MQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
                                   132       142       152       162       172       182       192       202       212       222       232       242       252        


Chain A from PDB  Type:PROTEIN  Length:138
 aligned with MODE_ECOLI | P0A9G8 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:138
                                   132       142       152       162       172       182       192       202       212       222       232       242       252        
           MODE_ECOLI   123 LQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
               SCOP domains d1h9sa1 A:123-199                                                            d1h9sa2 A:200-260                                             SCOP domains
               CATH domains 1h9sA02 A:123-183,A:252-260                                  1h9sA01 A:184-251  [code=2.40.50.100, no name defined]              1h9sA02   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeee.....eeeeeeee.....eeeeeeehhhhhhhh.....eeeeeehhhhheee.hhhhhhhh.eeeeeeeeeeee...eeeeeeee...eeeeeeee.hhh.......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1h9s A 123 MQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
                                   132       142       152       162       172       182       192       202       212       222       232       242       252        


Chain A from PDB  Type:PROTEIN  Length:138
 aligned with MODE_SHIFL | P0A9H0 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:138
                                   132       142       152       162       172       182       192       202       212       222       232       242       252        
           MODE_SHIFL   123 LQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
               SCOP domains d1h9sa1 A:123-199                                                            d1h9sa2 A:200-260                                             SCOP domains
               CATH domains 1h9sA02 A:123-183,A:252-260                                  1h9sA01 A:184-251  [code=2.40.50.100, no name defined]              1h9sA02   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeee.....eeeeeeee.....eeeeeeehhhhhhhh.....eeeeeehhhhheee.hhhhhhhh.eeeeeeeeeeee...eeeeeeee...eeeeeeee.hhh.......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1h9s A 123 MQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
                                   132       142       152       162       172       182       192       202       212       222       232       242       252        


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with MODE_ECO57 | P0A9G9 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:137
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       
           MODE_ECO57   124 QTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
               SCOP domains d1h9sb1 B:124-199                                                           d1h9sb2 B:200-260                                             SCOP domains
               CATH domains 1h9sB02 B:124-183,B:252-260                                 1h9sB01 B:184-251  [code=2.40.50.100, no name defined]              1h9sB02   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.....eeeeeeee.....eeeeeeehhhhhhh......eeeeeehhhhheee.hhhhhhhh.eeeeeeeeeeee...eeeeeee.....eeeeeee.hhh.......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h9s B 124 QTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLEQGQNVTAYFNADSVIIAT 260
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with MODE_ECOLI | P0A9G8 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:137
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       
           MODE_ECOLI   124 QTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
               SCOP domains d1h9sb1 B:124-199                                                           d1h9sb2 B:200-260                                             SCOP domains
               CATH domains 1h9sB02 B:124-183,B:252-260                                 1h9sB01 B:184-251  [code=2.40.50.100, no name defined]              1h9sB02   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.....eeeeeeee.....eeeeeeehhhhhhh......eeeeeehhhhheee.hhhhhhhh.eeeeeeeeeeee...eeeeeee.....eeeeeee.hhh.......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h9s B 124 QTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLEQGQNVTAYFNADSVIIAT 260
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with MODE_SHIFL | P0A9H0 from UniProtKB/Swiss-Prot  Length:262

    Alignment length:137
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       
           MODE_SHIFL   124 QTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIAT 260
               SCOP domains d1h9sb1 B:124-199                                                           d1h9sb2 B:200-260                                             SCOP domains
               CATH domains 1h9sB02 B:124-183,B:252-260                                 1h9sB01 B:184-251  [code=2.40.50.100, no name defined]              1h9sB02   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.....eeeeeeee.....eeeeeeehhhhhhh......eeeeeehhhhheee.hhhhhhhh.eeeeeeeeeeee...eeeeeee.....eeeeeee.hhh.......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h9s B 124 QTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLEQGQNVTAYFNADSVIIAT 260
                                   133       143       153       163       173       183       193       203       213       223       233       243       253
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H9S)

(-) Gene Ontology  (9, 25)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (MODE_ECO57 | P0A9G9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0015689    molybdate ion transport    The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B   (MODE_ECOLI | P0A9G8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0015689    molybdate ion transport    The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain A,B   (MODE_SHIFL | P0A9H0)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0015689    molybdate ion transport    The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MODE_ECO57 | P0A9G9: 1h9r 1o7l
        MODE_ECOLI | P0A9G8: 1b9m 1b9n 1h9r 1o7l
        MODE_SHIFL | P0A9H0: 1h9r 1o7l

(-) Related Entries Specified in the PDB File

1b9m REGULATOR FROM ESCHERICHIA COLI
1b9n REGULATOR FROM ESCHERICHIA COLI
1h9r TUNGSTATE BOUND COMPLEX DIMOP DOMAIN OF MODE FROM E.COLI