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Asym./Biol. Unit (Jmol Viewer)

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Title :   SULFURTRANSFERASE FROM AZOTOBACTER VINELANDII IN COMPLEX WITH PHOSPHATE

Authors :   D. Bordo, F. Forlani, A. Spallarossa, R. Colnaghi, A. Carpen, S. Pagani, M. Bolognesi

Date :   11 May 01 (Deposition) - 16 May 02 (Release) - 05 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : X

Keywords :   Transferase, Sulfur Metabolism, Thiosulfate:Cyanide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Bordo, F. Forlani, A. Spallarossa, R. Colnaghi, A. Carpen, M. Bolognesi, S. Pagani
A Persulfurated Cysteine Promotes Active Site Reactivity In Azotobacter Vinelandii Rhodanse
Biol. Chem. V. 382 1245 2001
PubMed-ID: 11592406 | Reference-DOI: 10.1515/BC.2001.155
(for further references see the PDB file header)

Molecule 1 - PUTATIVE THIOSULFATE SULFURTRANSFERASE
	Cellular Location	:	CYTOPLASM
	Chains	:	X
	EC Number	:	2.8.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI M15
	Expression System Cellular Location	:	CYTOPLASM
	Expression System Plasmid	:	PQE32
	Expression System Taxid	:	1007065
	Expression System Variant	:	PRE4
	Expression System Vector Type	:	PLASMID
	Gene	:	RHDA
	Organism Scientific	:	AZOTOBACTER VINELANDII
	Organism Taxid	:	354
	Synonym	:	RHODANESE-LIKE PROTEIN

		1
Asymmetric/Biological Unit	:	X

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY X:159 , ALA X:160 , LEU X:163 , PRO X:188 , HOH X:2199	BINDING SITE FOR RESIDUE EDO X1273
2	AC2	SOFTWARE	PHE X:46 , ARG X:51 , GLU X:75 , HOH X:2039 , HOH X:2201	BINDING SITE FOR RESIDUE EDO X1274

(no "SS Bond" information available for 1H4M)

Asymmetric/Biological Unit

No.	Residues
1	Pro X:57	-	Pro X:58

(no "SAP(SNP)/Variant" information available for 1H4M)

Asymmetric/Biological Unit (3, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RHODANESE_3	PS50206	Rhodanese domain profile.	THTR_AZOVI	21-129 159-270	2	X:21-129 X:159-270
2	RHODANESE_1	PS00380	Rhodanese signature 1.	THTR_AZOVI	36-47	1	X:36-47
3	RHODANESE_2	PS00683	Rhodanese C-terminal signature.	THTR_AZOVI	251-261	1	X:251-261

(no "Exon" information available for 1H4M)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain X from PDB  Type:PROTEIN  Length:271
 aligned with THTR_AZOVI | P52197 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:271
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270 
           THTR_AZOVI     1 MDDFASLPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL 271
               SCOP domains d1h4mx1 X:1-135 Sulfurtransferase                                                                                                      d1h4mx2 X:136-271 Sulfurtransferase                                                                                                      SCOP domains
               CATH domains 1h4mX01 X:1-144 Oxidized Rhodanese, domain 1                                                                                                    1h4mX02 X:145-270 Oxidized Rhodanese, domain 1                                                                                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh....eehhhhhhh......eeeee..hhhhhhhh.....ee.hhhhhh...........hhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhh....eeee.hhhhhhhhh..........................hhhhhhhhh....eeeee..hhhhhh...............ee.hhhhh.hhhhh.....hhhhhhhh.......eeeee....hhhhhhhhhhhhh....eee..hhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------RHODANESE_3  PDB: X:21-129 UniProt: 21-129                                                                   -----------------------------RHODANESE_3  PDB: X:159-270 UniProt: 159-270                                                                    - PROSITE (1)
                PROSITE (2) -----------------------------------RHODANESE_1 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2---------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h4m X   1 MDDFASLPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL 271
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Rhodanese/Cell cycle control phosphatase (39)

Superfamily: Rhodanese/Cell cycle control phosphatase (39)

Family: Multidomain sulfurtransferase (rhodanese) (14)

Protein domain: Sulfurtransferase (4)

Azotobacter vinelandii [TaxId: 354] (3)

1a	d1h4mx1	X:1-135
1b	d1h4mx2	X:136-271

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Oxidized Rhodanese; domain 1 (42)

Homologous Superfamily: Oxidized Rhodanese, domain 1 (42)

Azotobacter vinelandii. Organism_taxid: 354. (3)

1a	1h4mX01	X:1-144
1b	1h4mX02	X:145-270

(no "Pfam Domain" information available for 1H4M)

Asymmetric/Biological Unit(hide GO term definitions)

Chain X (THTR_AZOVI | P52197)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004792	thiosulfate sulfurtransferase activity	Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Pro X:57 - Pro X:58	[ RasMol ]

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	THTR_AZOVI \| P52197	:	1e0c 1h4k

1e0c	SULFURTRANSFERASE FROM AZOTOBACTER VINELANDII
1h4k	SULFURTRANSFERASE FROM AZOTOBACTER VINELANDII IN COMPLEX WITH HYPOPHOSPHITE

Description

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Ligands, Modified Residues, Ions (1, 2)

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SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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