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(-) Description

Title :  METHYLOBACTERIUM EXTORQUENS METHANOL DEHYDROGENASE D303E MUTANT
 
Authors :  F. Mohammed, R. Gill, D. Thompson, J. B. Cooper, S. P. Wood, P. R. Afolabi, C. Anthony
Date :  11 May 01  (Deposition) - 23 Aug 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Oxidoreductase, Dehydrogenase, Quinoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. R. Afolabi, F. Mohammed, K. Amaratunga, O. Majekodunmi, S. L. Dales, R. Gill, D. Thompson, J. B. Cooper, S. P. Wood, P. M. Goodwin, C. Anthony
Site-Directed Mutagenesis And X-Ray Crystallography Of The Pqq-Containing Quinoprotein Methanol Dehydrogenase And Its Electron Acceptor, Cytochrome C(L)(, )
Biochemistry V. 40 9799 2001
PubMed-ID: 11502173  |  Reference-DOI: 10.1021/BI002932L

(-) Compounds

Molecule 1 - METHANOL DEHYDROGENASE SUBUNIT 1
    Chains: A, C, E, G
    Mutation: YES
    Organism Scientific: METHYLOBACTERIUM EXTORQUENS
    Organism Taxid: 408
    Synonym: MDH LARGE, ALPHA SUBUNIT, MEDH
 
Molecule 2 - METHANOL DEHYDROGENASE SUBUNIT 2
    Chains: B, D, F, H
    EC Number: 1.1.99.8
    Organism Scientific: METHYLOBACTERIUM EXTORQUENS
    Organism Taxid: 408
    Other Details: PYRROLO-QUINOLINE QUINONE PROSTHETIC GROUP WITH ACTIVE SITE CALCIUM IONS
    Synonym: MDH SMALL, BETA SUBUNIT, MEDH

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2PQQ4Ligand/IonPYRROLOQUINOLINE QUINONE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2PQQ2Ligand/IonPYRROLOQUINOLINE QUINONE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2PQQ2Ligand/IonPYRROLOQUINOLINE QUINONE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:177 , ASN A:261 , GLU A:303 , PQQ A:601BINDING SITE FOR RESIDUE CA A 701
2AC2SOFTWAREGLU C:177 , ASN C:261 , GLU C:303 , PQQ C:601BINDING SITE FOR RESIDUE CA C 701
3AC3SOFTWAREGLU E:177 , ASN E:261 , GLU E:303 , PQQ E:601BINDING SITE FOR RESIDUE CA E 701
4AC4SOFTWAREGLU G:177 , ASN G:261 , GLU G:303 , PQQ G:601BINDING SITE FOR RESIDUE CA G 701
5AC5SOFTWAREGLU A:55 , CYS A:104 , VAL A:107 , ARG A:109 , THR A:159 , SER A:174 , GLY A:175 , ALA A:176 , GLU A:177 , THR A:241 , TRP A:243 , ASN A:261 , GLU A:303 , ARG A:331 , ASN A:394 , TRP A:476 , GLY A:539 , TRP A:540 , CA A:701BINDING SITE FOR RESIDUE PQQ A 601
6AC6SOFTWAREGLU C:55 , CYS C:104 , VAL C:107 , ARG C:109 , THR C:159 , SER C:174 , GLY C:175 , ALA C:176 , GLU C:177 , THR C:241 , TRP C:243 , ASN C:261 , GLU C:303 , ARG C:331 , ASN C:394 , TRP C:476 , GLY C:539 , TRP C:540 , CA C:701BINDING SITE FOR RESIDUE PQQ C 601
7AC7SOFTWAREGLU E:55 , CYS E:104 , VAL E:107 , ARG E:109 , THR E:159 , SER E:174 , GLY E:175 , ALA E:176 , GLU E:177 , THR E:241 , TRP E:243 , ASN E:261 , GLU E:303 , ARG E:331 , ASN E:394 , TRP E:476 , GLY E:539 , TRP E:540 , CA E:701BINDING SITE FOR RESIDUE PQQ E 601
8AC8SOFTWAREGLU G:55 , CYS G:104 , VAL G:107 , ARG G:109 , THR G:159 , SER G:174 , GLY G:175 , ALA G:176 , GLU G:177 , THR G:241 , TRP G:243 , ASN G:261 , GLU G:303 , ARG G:331 , ASN G:394 , TRP G:476 , GLY G:539 , TRP G:540 , CA G:701BINDING SITE FOR RESIDUE PQQ G 601

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:103 -A:104
2A:386 -A:415
3B:6 -B:12
4C:103 -C:104
5C:386 -C:415
6D:6 -D:12
7E:103 -E:104
8E:386 -E:415
9F:6 -F:12
10G:103 -G:104
11G:386 -G:415
12H:6 -H:12

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Phe A:71 -Pro A:72
2Ala A:263 -Pro A:264
3Cys A:386 -Pro A:387
4Phe C:71 -Pro C:72
5Ala C:263 -Pro C:264
6Cys C:386 -Pro C:387
7Phe E:71 -Pro E:72
8Ala E:263 -Pro E:264
9Cys E:386 -Pro E:387
10Phe G:71 -Pro G:72
11Ala G:263 -Pro G:264
12Cys G:386 -Pro G:387
13Lys A:275 -Trp A:276
14Lys C:275 -Trp C:276
15Lys E:275 -Trp E:276
16Lys G:275 -Trp G:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H4J)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIAL_PQQ_1PS00363 Bacterial quinoprotein dehydrogenases signature 1.DHM1_METEA40-68
 
 
 		  4A:13-41
C:13-41
E:13-41
G:13-41
2BACTERIAL_PQQ_2PS00364 Bacterial quinoprotein dehydrogenases signature 2.DHM1_METEA270-291
 
 
 		  4A:243-264
C:243-264
E:243-264
G:243-264
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIAL_PQQ_1PS00363 Bacterial quinoprotein dehydrogenases signature 1.DHM1_METEA40-68
 
 
 		  2A:13-41
C:13-41
-
-
2BACTERIAL_PQQ_2PS00364 Bacterial quinoprotein dehydrogenases signature 2.DHM1_METEA270-291
 
 
 		  2A:243-264
C:243-264
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIAL_PQQ_1PS00363 Bacterial quinoprotein dehydrogenases signature 1.DHM1_METEA40-68
 
 
 		  2-
-
E:13-41
G:13-41
2BACTERIAL_PQQ_2PS00364 Bacterial quinoprotein dehydrogenases signature 2.DHM1_METEA270-291
 
 
 		  2-
-
E:243-264
G:243-264

(-) Exons   (0, 0)

(no "Exon" information available for 1H4J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:595
 aligned with DHM1_METEA | P16027 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:595
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617     
           DHM1_METEA    28 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 622
               SCOP domains d1h4ja_ A: Methanol dehydrogenase, heavy chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1h4jA00 A:1-595  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.................ee........hhh.eeeeeeee...........eee..eeeee......eeeee..eeeeeeeee....hhhhhhhh.........eee........eeeee....eeeeee.....eeeeee..hhhhh.......eee..eeee...hhhhh...eeeeee.....eeeeee...hhhhhh........hhhhh..hhhhhh.hhhhhhhh........eee....eeeee.......hhhhh........eeeeee.....eeeeee...............eeeeee.....eeeeeeee....eeeeee.....eeeeee.......eeee......eee.hhhh......eeee.............eee....eeeeeee.eeeeeee.............eeeeeee............eeeeee......eeeeeee.......eeee...eeeee....eeeeee.....eeeeee.........eeeee..eeeeeeee..hhhhhhhhhh......hhhhhhhhh.hhhhh.....eeeeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------BACTERIAL_PQQ_1  PDB: A:13-41---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h4j A   1 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 595
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590     


Chain B from PDB  Type:PROTEIN  Length:72
 aligned with DHM2_METEA | P14775 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:72
                                    32        42        52        62        72        82        92  
           DHM2_METEA    23 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  94
               SCOP domains d1h4jb_ B: Methanol dehydrogenase, light chain                           SCOP domains
               CATH domains 1h4jB00 B:1-72 Methanol Dehydrogenase, chain B                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 1h4j B   1 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  72
                                    10        20        30        40        50        60        70  


Chain C from PDB  Type:PROTEIN  Length:595
 aligned with DHM1_METEA | P16027 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:595
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617     
           DHM1_METEA    28 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 622
               SCOP domains d1h4jc_ C: Methanol dehydrogenase, heavy chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1h4jC00 C:1-595  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.................ee........hhh.eeeeeeee...........eee..eeeee......eeeee..eeeeeeeee....hhhhhhhh.........eee........eeeee....eeeeee.....eeeeee..hhhhh.......eee..eeee...hhhhh...eeeeee.....eeeeee...hhhhhh........hhhhh..hhhhhh.hhhhhhhh........eee....eeeee.......hhhhh........eeeeee.....eeeeee...............eeeeee.....eeeeeeee....eeeeee.....eeeeee.......eeee......eee.hhhh......eeee.............eee....eeeeeee.eeeeeee.............eeeeeee............eeeeee......eeeeeee.......eeee...eeeee....eeeeee.....eeeeee.........eeeee..eeeeeeee..hhhhhhhhhh......hhhhhhhhh.hhhhh.....eeeeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------BACTERIAL_PQQ_1  PDB: C:13-41---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h4j C   1 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 595
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590     


Chain D from PDB  Type:PROTEIN  Length:72
 aligned with DHM2_METEA | P14775 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:72
                                    32        42        52        62        72        82        92  
           DHM2_METEA    23 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  94
               SCOP domains d1h4jd_ D: Methanol dehydrogenase, light chain                           SCOP domains
               CATH domains 1h4jD00 D:1-72 Methanol Dehydrogenase, chain B                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 1h4j D   1 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  72
                                    10        20        30        40        50        60        70  


Chain E from PDB  Type:PROTEIN  Length:595
 aligned with DHM1_METEA | P16027 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:595
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617     
           DHM1_METEA    28 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 622
               SCOP domains d1h4je_ E: Methanol dehydrogenase, heavy chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1h4jE00 E:1-595  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.................ee........hhh.eeeeeeee...........eee..eeeee......eeeee..eeeeeeeee....hhhhhhhh.........eee........eeeee....eeeeee.....eeeeee..hhhhh.......eee..eeee...hhhhh...eeeeee.....eeeeee...hhhhhh........hhhhh..hhhhhh.hhhhhhhh........eee....eeeee.......hhhhh........eeeeee.....eeeeee...............eeeeee.....eeeeeeee....eeeeee.....eeeeee.......eeee......eee.hhhh......eeee.............eee....eeeeeee.eeeeeee.............eeeeeee............eeeeee......eeeeeee.......eeee...eeeee....eeeeee.....eeeeee.........eeeee..eeeeeeee..hhhhhhhhhh......hhhhhhhhh.hhhhh.....eeeeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------BACTERIAL_PQQ_1  PDB: E:13-41---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h4j E   1 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 595
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590     


Chain F from PDB  Type:PROTEIN  Length:72
 aligned with DHM2_METEA | P14775 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:72
                                    32        42        52        62        72        82        92  
           DHM2_METEA    23 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  94
               SCOP domains d1h4jf_ F: Methanol dehydrogenase, light chain                           SCOP domains
               CATH domains 1h4jF00 F:1-72 Methanol Dehydrogenase, chain B                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 1h4j F   1 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  72
                                    10        20        30        40        50        60        70  


Chain G from PDB  Type:PROTEIN  Length:595
 aligned with DHM1_METEA | P16027 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:595
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617     
           DHM1_METEA    28 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 622
               SCOP domains d1h4jg_ G: Methanol dehydrogenase, heavy chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1h4jG00 G:1-595  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.................ee........hhh.eeeeeeee...........eee..eeeee......eeeee..eeeeeeeee....hhhhhhhh.........eee........eeeee....eeeeee.....eeeeee..hhhhh.......eee..eeee...hhhhh...eeeeee.....eeeeee...hhhhhh........hhhhh..hhhhhh.hhhhhhhh........eee....eeeee.......hhhhh........eeeeee.....eeeeee...............eeeeee.....eeeeeeee....eeeeee.....eeeeee.......eeee......eee.hhhh......eeee.............eee....eeeeeee.eeeeeee.............eeeeeee............eeeeee......eeeeeee........eee...eeeee....eeeeee.....eeeeee.........eeeee..eeeeeeee..hhhhhhhhhh......hhhhhhhhh.hhhhh.....eeeeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------BACTERIAL_PQQ_1  PDB: G:13-41---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h4j G   1 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK 595
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590     


Chain H from PDB  Type:PROTEIN  Length:72
 aligned with DHM2_METEA | P14775 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:72
                                    32        42        52        62        72        82        92  
           DHM2_METEA    23 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  94
               SCOP domains d1h4jh_ H: Methanol dehydrogenase, light chain                           SCOP domains
               CATH domains 1h4jH00 H:1-72 Methanol Dehydrogenase, chain B                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 1h4j H   1 YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS  72
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Few Secondary Structures (1120)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H4J)

(-) Gene Ontology  (16, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (DHM1_METEA | P16027)
molecular function
    GO:0052932    2-chloroethanol cytochrome-c oxidoreductase activity    Catalysis of the reaction: 2-chloroethanol + 2 cytochrome c(L) = chloroacetaldehyde + 2 reduced cytochrome c(L).
    GO:0052933    alcohol dehydrogenase (cytochrome c(L)) activity    Catalysis of the reaction: primary alcohol + 2 cytochrome c(L) = 2 reduced cytochrome c(L) + an aldehyde + 2 H+.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0052931    ethanol cytochrome-c oxidoreductase activity    Catalysis of the reaction: ethanol + 2 cytochrome c(L) = acetaldehyde + 2 reduced cytochrome c(L) + 2 H+.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0052930    methanol ferricytochrome-c oxidoreductase activity    Catalysis of the reaction: methanol + 2 ferricytochrome c = formaldehyde + 2 ferrocytochrome c + 2 H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0015945    methanol metabolic process    The chemical reactions and pathways involving methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,D,F,H   (DHM2_METEA | P14775)
molecular function
    GO:0052932    2-chloroethanol cytochrome-c oxidoreductase activity    Catalysis of the reaction: 2-chloroethanol + 2 cytochrome c(L) = chloroacetaldehyde + 2 reduced cytochrome c(L).
    GO:0004022    alcohol dehydrogenase (NAD) activity    Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
    GO:0052933    alcohol dehydrogenase (cytochrome c(L)) activity    Catalysis of the reaction: primary alcohol + 2 cytochrome c(L) = 2 reduced cytochrome c(L) + an aldehyde + 2 H+.
    GO:0052931    ethanol cytochrome-c oxidoreductase activity    Catalysis of the reaction: ethanol + 2 cytochrome c(L) = acetaldehyde + 2 reduced cytochrome c(L) + 2 H+.
    GO:0052930    methanol ferricytochrome-c oxidoreductase activity    Catalysis of the reaction: methanol + 2 ferricytochrome c = formaldehyde + 2 ferrocytochrome c + 2 H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0015945    methanol metabolic process    The chemical reactions and pathways involving methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
    GO:0015946    methanol oxidation    The chemical reactions and pathways resulting in the conversion of methanol to methyl-Coenzyme M.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  DHM2_METEA | P14775
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  1.1.99.8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHM1_METEA | P16027: 1h4i 1w6s
        DHM2_METEA | P14775: 1h4i 1w6s

(-) Related Entries Specified in the PDB File

1h4i METHYLOBACTERIUM EXTORQUENS METHANOL DEHYDROGENASE