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(-) Description

Title :  TUNGSTEN CONTAINING FORMATE DEHYDROGENASE FROM DESULFOVIBRIO GIGAS
 
Authors :  H. C. A. Raaijmakers
Date :  19 Jun 02  (Deposition) - 20 Feb 03  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  K,L  (1x)
Keywords :  Electron Transport, Tungsten Selenium Formate Dehydrogenase, Selenocysteine, Molybdopterin, Mgd, Iron-Sulphur Cluster, Periplasmic (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. C. A. Raaijmakers, S. Macieira, J. Dias, S. Teixeira, S. Bursakov, R. Huber, J. Moura, I. Moura, M. Romao
Gene Sequence And The 1. 8 A Crystal Structure Of The Tungsten-Containing Formate Dehydrogenase From Desulfovibri Gigas
Structure V. 10 1261 2002
PubMed-ID: 12220497  |  Reference-DOI: 10.1016/S0969-2126(02)00826-2
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FORMATE DEHYDROGENASE SUBUNIT ALPHA
    ChainsA, K
    EC Number1.2.1.2
    Organism ScientificDESULFOVIBRIO GIGAS
    Organism Taxid879
    Other DetailsNATIVE PROTEIN
    StrainNCIB 9332
    SynonymFDH SUBUNIT ALPHA, FORMATE DEHYDROGENASE LARGE SUBUNIT
 
Molecule 2 - FORMATE DEHYDROGENASE SUBUNIT BETA
    ChainsB, L
    Organism ScientificDESULFOVIBRIO GIGAS
    Organism Taxid879
    StrainNCIB 9332
    SynonymFDH SUBUNIT BETA, FORMATE DEHYDROGENASE SMALL SUBUNIT

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABKL
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 22)

Asymmetric Unit (8, 22)
No.NameCountTypeFull Name
12MD2Ligand/IonGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER
2CA2Ligand/IonCALCIUM ION
3EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4MGD2Ligand/Ion2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
5SEC2Mod. Amino Acid
6SF48Ligand/IonIRON/SULFUR CLUSTER
7UNX2Ligand/IonUNKNOWN ATOM OR ION
8W2Ligand/IonTUNGSTEN ION
Biological Unit 1 (5, 8)
No.NameCountTypeFull Name
12MD1Ligand/IonGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER
2CA-1Ligand/IonCALCIUM ION
3EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4MGD1Ligand/Ion2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
5SEC-1Mod. Amino Acid
6SF44Ligand/IonIRON/SULFUR CLUSTER
7UNX1Ligand/IonUNKNOWN ATOM OR ION
8W-1Ligand/IonTUNGSTEN ION
Biological Unit 2 (5, 8)
No.NameCountTypeFull Name
12MD1Ligand/IonGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER
2CA-1Ligand/IonCALCIUM ION
3EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4MGD1Ligand/Ion2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
5SEC-1Mod. Amino Acid
6SF44Ligand/IonIRON/SULFUR CLUSTER
7UNX1Ligand/IonUNKNOWN ATOM OR ION
8W-1Ligand/IonTUNGSTEN ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:358 , LYS A:360 , LYS A:363 , LEU A:393 , GLY A:394 , ASN A:395 , HOH A:2328BINDING SITE FOR RESIDUE CA A 1100
02AC2SOFTWARETHR K:358 , LYS K:360 , LYS K:363 , LEU K:393 , GLY K:394 , ASN K:395 , HOH K:2287BINDING SITE FOR RESIDUE CA K 1100
03AC3SOFTWARESEC A:158 , 2MD A:1001 , MGD A:1002 , UNX A:1003BINDING SITE FOR RESIDUE W A 1000
04AC4SOFTWARESEC K:158 , 2MD K:1001 , MGD K:1002 , UNX K:1003BINDING SITE FOR RESIDUE W K 1000
05AC5SOFTWAREALA A:130 , GLN A:154 , ILE A:157 , SEC A:158 , MET A:371 , GLU A:409 , GLY A:516 , GLN A:517 , ASN A:518 , SER A:522 , VAL A:542 , ASN A:543 , ILE A:544 , CYS A:572 , ALA A:573 , LYS A:578 , ASP A:605 , THR A:854 , ARG A:856 , GLN A:862 , THR A:863 , LEU A:865 , MET A:866 , TRP A:936 , ASN A:951 , THR A:967 , W A:1000 , MGD A:1002 , UNX A:1003 , HOH A:2646 , HOH A:2692 , HOH A:2697BINDING SITE FOR RESIDUE 2MD A 1001
06AC6SOFTWARELYS A:56 , SEC A:158 , GLY A:192 , SER A:193 , ASN A:194 , GLU A:197 , ASN A:198 , VAL A:219 , ASP A:220 , PRO A:221 , ARG A:222 , SER A:238 , GLY A:239 , ASP A:241 , ALA A:370 , MET A:371 , TRP A:373 , GLY A:408 , TYR A:855 , ARG A:856 , VAL A:857 , THR A:858 , HIS A:860 , TRP A:861 , GLN A:862 , HIS A:937 , LYS A:968 , W A:1000 , 2MD A:1001 , UNX A:1003 , HOH A:2053 , HOH A:2317 , HOH A:2700 , HOH A:2701BINDING SITE FOR RESIDUE MGD A 1002
07AC7SOFTWARESEC A:158 , GLU A:409 , VAL A:412 , W A:1000 , 2MD A:1001 , MGD A:1002BINDING SITE FOR RESIDUE UNX A 1003
08AC8SOFTWARECYS A:17 , TYR A:19 , CYS A:20 , CYS A:24 , LEU A:53 , CYS A:54 , GLY A:57 , PRO A:200 , ILE A:201BINDING SITE FOR RESIDUE SF4 A 1010
09AC9SOFTWAREHOH A:2702 , HOH A:2703 , HOH A:2704 , PRO B:42 , ASP B:43 , ASP B:123 , ARG B:126 , TYR B:211BINDING SITE FOR RESIDUE EPE A 1200
10BC1SOFTWARECYS B:11 , THR B:12 , ALA B:13 , CYS B:14 , ARG B:15 , CYS B:17 , CYS B:156 , THR B:158 , MET B:161BINDING SITE FOR RESIDUE SF4 B 1011
11BC2SOFTWAREPHE B:4 , CYS B:21 , HIS B:25 , GLN B:71 , CYS B:137 , ASP B:138 , MET B:139 , CYS B:140 , PRO B:150 , CYS B:152BINDING SITE FOR RESIDUE SF4 B 1012
12BC3SOFTWARECYS B:72 , ARG B:73 , CYS B:75 , PRO B:79 , CYS B:80 , CYS B:120 , TYR B:122 , PRO B:125 , LYS B:136BINDING SITE FOR RESIDUE SF4 B 1013
13BC4SOFTWAREALA K:130 , GLN K:154 , ILE K:157 , SEC K:158 , MET K:371 , GLU K:409 , GLY K:516 , GLN K:517 , ASN K:518 , SER K:522 , VAL K:542 , ASN K:543 , ILE K:544 , CYS K:572 , ALA K:573 , LYS K:578 , ASP K:605 , THR K:854 , ARG K:856 , GLN K:862 , THR K:863 , LEU K:865 , MET K:866 , TRP K:936 , ASN K:951 , THR K:967 , W K:1000 , MGD K:1002 , UNX K:1003 , HOH K:2561 , HOH K:2611 , HOH K:2618BINDING SITE FOR RESIDUE 2MD K 1001
14BC5SOFTWARELYS K:56 , SEC K:158 , GLY K:192 , SER K:193 , ASN K:194 , GLU K:197 , ASN K:198 , VAL K:219 , ASP K:220 , PRO K:221 , ARG K:222 , SER K:238 , GLY K:239 , ASP K:241 , ALA K:370 , MET K:371 , TRP K:373 , GLY K:408 , TYR K:855 , ARG K:856 , VAL K:857 , THR K:858 , HIS K:860 , TRP K:861 , GLN K:862 , HIS K:937 , LYS K:968 , W K:1000 , 2MD K:1001 , UNX K:1003 , HOH K:2162 , HOH K:2276 , HOH K:2612 , HOH K:2619 , HOH K:2620BINDING SITE FOR RESIDUE MGD K 1002
15BC6SOFTWARESEC K:158 , GLU K:409 , VAL K:412 , W K:1000 , 2MD K:1001 , MGD K:1002BINDING SITE FOR RESIDUE UNX K 1003
16BC7SOFTWARECYS K:17 , TYR K:19 , CYS K:20 , GLY K:23 , CYS K:24 , LEU K:53 , CYS K:54 , LYS K:56 , GLY K:57 , PRO K:200 , ILE K:201BINDING SITE FOR RESIDUE SF4 K 1010
17BC8SOFTWAREHOH K:2623 , PRO L:42 , ASP L:43 , ASP L:123BINDING SITE FOR RESIDUE EPE K 1200
18BC9SOFTWARECYS L:11 , THR L:12 , ALA L:13 , CYS L:14 , ARG L:15 , CYS L:17 , CYS L:156 , THR L:158 , MET L:161BINDING SITE FOR RESIDUE SF4 L 1011
19CC1SOFTWAREPHE L:4 , CYS L:21 , HIS L:25 , LYS L:50 , GLN L:71 , CYS L:137 , ASP L:138 , MET L:139 , CYS L:140 , PRO L:150 , CYS L:152BINDING SITE FOR RESIDUE SF4 L 1012
20CC2SOFTWARECYS L:72 , ARG L:73 , CYS L:75 , PRO L:79 , CYS L:80 , CYS L:120 , TYR L:122 , PRO L:125 , LYS L:136BINDING SITE FOR RESIDUE SF4 L 1013

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:817 -A:844
2K:817 -K:844

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Gly A:127 -Ser A:128
2Lys A:600 -Asn A:601
3Trp A:730 -Pro A:731
4Cys A:817 -Pro A:818
5Phe A:942 -Pro A:943
6Asn B:40 -Pro B:41
7Gly K:127 -Ser K:128
8Lys K:600 -Asn K:601
9Trp K:730 -Pro K:731
10Cys K:817 -Pro K:818
11Phe K:942 -Pro K:943
12Asn L:40 -Pro L:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H0H)

(-) PROSITE Motifs  (3, 6)

Asymmetric Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_MOW_BIS_MGDPS51669 Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.FDHA_DESGI45-103
 
  2A:10-68
K:10-68
2MOLYBDOPTERIN_PROK_1PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.FDHA_DESGI50-68
 
  2A:15-33
K:15-33
3MOLYBDOPTERIN_PROK_3PS00932 Prokaryotic molybdopterin oxidoreductases signature 3.FDHA_DESGI924-951
 
  2A:889-916
K:889-916
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_MOW_BIS_MGDPS51669 Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.FDHA_DESGI45-103
 
  1A:10-68
-
2MOLYBDOPTERIN_PROK_1PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.FDHA_DESGI50-68
 
  1A:15-33
-
3MOLYBDOPTERIN_PROK_3PS00932 Prokaryotic molybdopterin oxidoreductases signature 3.FDHA_DESGI924-951
 
  1A:889-916
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_MOW_BIS_MGDPS51669 Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.FDHA_DESGI45-103
 
  1-
K:10-68
2MOLYBDOPTERIN_PROK_1PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.FDHA_DESGI50-68
 
  1-
K:15-33
3MOLYBDOPTERIN_PROK_3PS00932 Prokaryotic molybdopterin oxidoreductases signature 3.FDHA_DESGI924-951
 
  1-
K:889-916

(-) Exons   (0, 0)

(no "Exon" information available for 1H0H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:977
 aligned with FDHA_DESGI | Q934F5 from UniProtKB/Swiss-Prot  Length:1012

    Alignment length:977
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895       905       915       925       935       945       955       965       975       985       995      1005       
          FDHA_DESGI     36 ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIUHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLYGPGREDGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDAANILTPSVGDPNTGIPETKAFMVNVTKA 1012
               SCOP domains d1h0ha2 A:1-812 Tungsten containing formate dehydrogenase, large subunit                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    d1h0ha1 A:813-977 Tungsten containing formate dehydrogenase, large subunit                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------1h0hA02 A:69-156,A:490-640  [code=3.40.50.740, no name defined]                         1h0hA03 A:157-268,A:321-410,A:735-801 Dimethylsulfoxide Reductase, domain 2                                     ----------------------------------------------------1h0hA03 A:157-268,A:321-410,A:735-801 Dimethylsulfoxide Reductase, domain 2               -------------------------------------------------------------------------------1h0hA02 A:69-156,A:490-640  [code=3.40.50.740, no name defined]                                                                                        ----------------------------------------------------------------------------------------------1h0hA03 A:157-268,A:321-410,A:735-801                              1h0hA04 A:802-977  [code=2.40.40.20, no name defined]                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee........eeeeee......eeeeee...........hhhhhhhhhhhh........eee.......ee.hhhhhhhhhhhhhhhhhhhheeee.....eeeee..eeee.....hhhhhhhhhhhhhhh....eehhhhh.hhhhhhhhhhhhh.......hhhhhhh.eeeee..hhhhhh.hhhhhhhhhhhh..eeeee......hhhhh.eee.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhh........ee..ee..ee....ee.hhhhh...................hhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhhhh.........eee.....hhhhhhhh.....ee...ee.......hhhhhhhhhh.........hhhhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhh....eeeee..hhhhhh.hhhhhhhhhh...eeeeee.......hhhhh...hhhhh..eeeeee..hhhhh.eeee....eeeee...........hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.......hhhhhhhhhhh.....eee..eee.......hhhhh.........hhhhh..ee..ee.hhh.....hhhhhhhh......ee........hhhhh........hhhhh.eeee....eeee.................................................................................eeeeee........hhhhhhhhhhhhhh...eeeehhhhhhhhh.....eeeeee..eeeeeeeee......eee..eee.eeeee.............hhhhh................eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------4FE4S_MOW_BIS_MGD  PDB: A:10-68 UniProt: 45-103            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOLYBDOPTERIN_PROK_3        ------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------MOLYBDOPTERIN_PROK_-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1h0h A    1 ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIxHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLYGPGREDGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDAANILTPSVGNPNTGIPETKAFMVNVTKA  977
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       
                                                                                                                                                                                       158-SEC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               

Chain B from PDB  Type:PROTEIN  Length:214
 aligned with FDHB_DESGI | Q8GC87 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:214
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    
          FDHB_DESGI      2 SKGFFVDTTRCTACRGCQVACKQWHGNPATPTENTGFHQNPPDFNFHTYKLVRMHEQEIDGRIDWLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKLCDPDDVRVIFLTAHNPKLYHEYAVA  215
               SCOP domains d1h0hb_ B: Tungsten containing formate dehydrogenase, small subunit                                                                                                                                                    SCOP domains
               CATH domains 1h0hB01 B:1-73,B:138-214  [code=3.30.70.20, no name defined]             1h0hB02 B:74-137  [code=3.30.70.20, no name defined]            1h0hB01 B:1-73,B:138-214  [code=3.30.70.20, no name defined]                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhh...hhhhhhhhhhhh........................eeeeeeeee..eeeeeeeee.......hhhhhhhh......eee......eee.hhhhhh.hhhhhhhhh.....ee......ee....hhhhhh....hhhhhhh....eeeeehhhhhhhhhhhhhhhh......ee.......eeeee..hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1h0h B    1 SKGFFVDTTRCTACRGCQVACKQWHGNPATPTENTGFHQNPPDFNFHTYKLVRMHEQEIDGRIDWLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKLCDPDDVRVIFLTAHNPKLYHEYAVA  214
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210    

Chain K from PDB  Type:PROTEIN  Length:977
 aligned with FDHA_DESGI | Q934F5 from UniProtKB/Swiss-Prot  Length:1012

    Alignment length:977
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895       905       915       925       935       945       955       965       975       985       995      1005       
          FDHA_DESGI     36 ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIUHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLYGPGREDGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDAANILTPSVGDPNTGIPETKAFMVNVTKA 1012
               SCOP domains d1h0hk2 K:1-812 Tungsten containing formate dehydrogenase, large subunit                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    d1h0hk1 K:813-977 Tungsten containing formate dehydrogenase, large subunit                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------1h0hK02 K:69-156,K:490-640  [code=3.40.50.740, no name defined]                         1h0hK03 K:157-268,K:321-410,K:735-801 Dimethylsulfoxide Reductase, domain 2                                     ----------------------------------------------------1h0hK03 K:157-268,K:321-410,K:735-801 Dimethylsulfoxide Reductase, domain 2               -------------------------------------------------------------------------------1h0hK02 K:69-156,K:490-640  [code=3.40.50.740, no name defined]                                                                                        ----------------------------------------------------------------------------------------------1h0hK03 K:157-268,K:321-410,K:735-801                              1h0hK04 K:802-977  [code=2.40.40.20, no name defined]                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee........eeeeee......eeeeee...........hhhhhhhhhhhh........eee.......ee.hhhhhhhhhhhhhhhhhhhheeee.....eeeee..eeee.....hhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhh......hhhhhhhh.eeeee..hhhhhh.hhhhhhhhhhhh..eeeee......hhhhh.eee.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhh........ee..ee..ee....ee.hhhhh...................hhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhhhh.........eee.....hhhhhhhh.....ee...ee.......hhhhhhhhhh.........hhhhhhhhhhhhhhhhhh...hhhhhhhh..........hhhhhhhhhhh....eeeee..hhhhhh.hhhhhhhhhh...eeeeee.......hhhhh...hhhhh..eeeeee..hhhhh.eeee....eeeee...........hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.......hhhhhhhhhhh.....eee..eee.......hhhhh.........hhhhh..ee..ee.hhh.....hhhhhhhh......ee........hhhhh........hhhhh.eeee....eeee.................................................................................eeeeee........hhhhhhhhhhhhhh...eeeehhhhhhhhh.....eeeeee..eeeeeeeee......ee....ee.eeeee.............hhhhh................eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------4FE4S_MOW_BIS_MGD  PDB: K:10-68 UniProt: 45-103            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOLYBDOPTERIN_PROK_3        ------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------MOLYBDOPTERIN_PROK_-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1h0h K    1 ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIxHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLYGPGREDGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDAANILTPSVGNPNTGIPETKAFMVNVTKA  977
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       
                                                                                                                                                                                       158-SEC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               

Chain L from PDB  Type:PROTEIN  Length:214
 aligned with FDHB_DESGI | Q8GC87 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:214
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    
          FDHB_DESGI      2 SKGFFVDTTRCTACRGCQVACKQWHGNPATPTENTGFHQNPPDFNFHTYKLVRMHEQEIDGRIDWLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKLCDPDDVRVIFLTAHNPKLYHEYAVA  215
               SCOP domains d1h0hl_ L: Tungsten containing formate dehydrogenase, small subunit                                                                                                                                                    SCOP domains
               CATH domains 1h0hL01 L:1-73,L:138-214  [code=3.30.70.20, no name defined]             1h0hL02 L:74-137  [code=3.30.70.20, no name defined]            1h0hL01 L:1-73,L:138-214  [code=3.30.70.20, no name defined]                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhh...hhhhhhhhhhhh........................eeeeeeeee..eeeeeeeee.......hhhhhhhh......eee......eee.hhhhhh.hhhhhhhhh.....ee......ee....hhhhhh....hhhhhhh....eeeeehhhhhhhhhhhhhhhhh.....ee.......eeeee..hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1h0h L    1 SKGFFVDTTRCTACRGCQVACKQWHGNPATPTENTGFHQNPPDFNFHTYKLVRMHEQEIDGRIDWLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKLCDPDDVRVIFLTAHNPKLYHEYAVA  214
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit

(-) CATH Domains  (4, 10)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H0H)

(-) Gene Ontology  (12, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,K   (FDHA_DESGI | Q934F5)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0008863    formate dehydrogenase (NAD+) activity    Catalysis of the reaction: formate + NAD(+) = CO(2) + NADH.
    GO:0047111    formate dehydrogenase (cytochrome-c-553) activity    Catalysis of the reaction: ferricytochrome C-553 + formate = ferrocytochrome C-553 + CO2.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0043546    molybdopterin cofactor binding    Interacting selectively and non-covalently with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0045333    cellular respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain B,L   (FDHB_DESGI | Q8GC87)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

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(no "Entries Sharing at Least One Protein Chain" available for 1H0H)

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(no "Related Entries Specified in the PDB File" available for 1H0H)