1GZD - JenaLib

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Title :   CRYSTAL STRUCTURE OF PIG PHOSPHOGLUCOSE ISOMERASE

Authors :   C. Davies, H. Muirhead

Date :   20 May 02 (Deposition) - 10 Jun 02 (Release) - 19 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Isomerase, Aldose-Ketose Isomerase, Glycolytic Enzyme, Cytokine, Multifunctional Protein, Gluconeogenesis, Glycolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Davies, H. Muirhead
Crystal Structure Of Phosphoglucose Isomerase From Pig Muscle And Its Complex With 5-Phosphoarabinonate
Proteins V. 49 577 2002
PubMed-ID: 12402366 | Reference-DOI: 10.1002/PROT.10255
(for further references see the PDB file header)

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE
	Chains	:	A
	EC Number	:	5.3.1.9
	Organism Common	:	PIG
	Organism Scientific	:	SUS SCROFA
	Organism Taxid	:	9823
	Synonym	:	PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI
	Tissue	:	MUSCLE

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:159 , SER A:209 , LYS A:210 , THR A:211 , THR A:214 , HOH A:2056	BINDING SITE FOR RESIDUE SO4 A1555

(no "SS Bond" information available for 1GZD)

Asymmetric Unit

No.	Residues
1	Gly A:383	-	Thr A:384

(no "SAP(SNP)/Variant" information available for 1GZD)

Asymmetric Unit (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P_GLUCOSE_ISOMERASE_3	PS51463	Glucose-6-phosphate isomerase family profile.	G6PI_PIG	26-553	1	A:25-552
2	P_GLUCOSE_ISOMERASE_1	PS00765	Phosphoglucose isomerase signature 1.	G6PI_PIG	268-281	1	A:267-280
3	P_GLUCOSE_ISOMERASE_2	PS00174	Phosphoglucose isomerase signature 2.	G6PI_PIG	502-519	1	A:501-518

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P_GLUCOSE_ISOMERASE_3	PS51463	Glucose-6-phosphate isomerase family profile.	G6PI_PIG	26-553	2	A:25-552
2	P_GLUCOSE_ISOMERASE_1	PS00765	Phosphoglucose isomerase signature 1.	G6PI_PIG	268-281	2	A:267-280
3	P_GLUCOSE_ISOMERASE_2	PS00174	Phosphoglucose isomerase signature 2.	G6PI_PIG	502-519	2	A:501-518

(no "Exon" information available for 1GZD)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:554
 aligned with G6PI_PIG | P08059 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:554
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551    
             G6PI_PIG     2 AALTQNPQFKKLQTWYHEHRSDLNLRRLFEGDKDRFNHFSLNLNTNHGRILLDYSKNLVTEAVMQMLVDLAKSRGVEAARERMFNGEKINFTEDRAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCKRVRSGEWKGYSGKSITDVINIGIGGSDLGPLMVTEALKPYSAEGPRVWFVSNIDGTHIAKTLATLNPESSLFIIASKTFTTQETITNAETAKEWFLQSAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINFFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKSTEEARKELQAAGKSPEDFEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGVIWDINSFDQWGVELGKQLAKKIEPELDGSSPVTSHDSSTNGLINFIKQEREA 555
               SCOP domains d1gzda_ A: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1gzdA01 A:1-98,A:294-514 Glucose-6-phosphate isomerase like protein; domain 1                     1gzdA02 A:99-293 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              1gzdA01 A:1-98,A:294-514 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                1gzdA03 A:515-554                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhheeeee....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhh...........eeeee..hhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhh..hhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhh..hhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhh.hhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------P_GLUCOSE_ISOMERASE_3  PDB: A:25-552 UniProt: 26-553                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gzd A   1 AALTQNPQFKKLQTWYHEHRSDLNLRRLFEGDKDRFNHFSLNLNTNHGRILLDYSKNLVTEAVMQMLVDLAKSRGVEAARERMFNGEKINFTEDRAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCKRVRSGEWKGYSGKSITDVINIGIGGSDLGPLMVTEALKPYSAEGPRVWFVSNIDGTHIAKTLATLNPESSLFIIASKTFTTQETITNAETAKEWFLQSAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINFFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKSTEEARKELQAAGKSPEDFEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGVIWDINSFDQWGVELGKQLAKKIEPELDGSSPVTSHDSSTNGLINFIKQEREA 554
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: SIS domain (85)

Superfamily: SIS domain (85)

Family: Phosphoglucose isomerase, PGI (37)

Protein domain: Phosphoglucose isomerase, PGI (24)

Pig (Sus scrofa) [TaxId: 9823] (2)

d1gzda_

Asymmetric Unit

Classes(

)

Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Glucose-6-phosphate isomerase like protein; domain 1 (105)

Pig (Sus scrofa) (2)

1a	1gzdA02	A:99-293
1b	1gzdA01	A:1-98,A:294-514

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Phosphoglucose isomerase, C-terminal domain (32)

Homologous Superfamily: [code=1.10.1390.10, no name defined] (32)

Pig (Sus scrofa) (2)

1gzdA03

A:515-554

(no "Pfam Domain" information available for 1GZD)

Asymmetric Unit(hide GO term definitions)

Chain A (G6PI_PIG | P08059)

molecular function
	GO:0005125	cytokine activity	Functions to control the survival, growth, differentiation and effector function of tissues and cells.
	GO:0004347	glucose-6-phosphate isomerase activity	Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
	GO:0001525	angiogenesis	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:383 - Thr A:384	[ RasMol ]

Biological Unit
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	G6PI_PIG \| P08059	:	1gzv

1gzv	THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM PIG MUSCLE COMPLEXED WITH 5-PHOSPHOARABINONATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 3)

Exons (0, 0)

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