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(-) Description

Title :  WD40 REGION OF HUMAN GROUCHO/TLE1
 
Authors :  L. H. Pearl, S. M. Roe, L. M. Pickles
Date :  10 Apr 02  (Deposition) - 13 Jun 02  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcriptional Co-Repressor, Wd40, Transcription Repressor, Wd Repeat (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. M. Pickles, S. M. Roe, E. J. Hemingway, S. Stifani, L. H. Pearl
Crystal Structure Of The C-Terminal Wd40 Repeat Domain Of The Human Groucho/Tle1 Transcriptional Corepressor
Structure V. 10 751 2002
PubMed-ID: 12057191  |  Reference-DOI: 10.1016/S0969-2126(02)00768-2

(-) Compounds

Molecule 1 - TRANSDUCIN-LIKE ENHANCER PROTEIN 1
    ChainsA, B
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System PlasmidPFASTBAC
    Expression System StrainSF9
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentRESIDUES 443-770 (END OF SP-REGION 443-473 AND WD40 REPEAT DOMAIN 474-770)
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsTHIS CONSTRUCT CONTAINS ALL THE SEVEN WD REPEATS
    SynonymESG1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:679 , HIS A:697 , HOH A:2247 , HOH A:2249 , HOH A:2264 , HOH A:2267 , HOH A:2268BINDING SITE FOR RESIDUE CA A1003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GXR)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asn A:494 -Pro A:495
2Thr A:727 -Pro A:728
3Asn B:494 -Pro B:495
4Thr B:727 -Pro B:728

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GXR)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WD_REPEATS_1PS00678 Trp-Asp (WD) repeats signature.TLE1_HUMAN589-603
 
631-645
 
  4A:589-603
B:589-603
A:631-645
B:631-645

(-) Exons   (7, 14)

Asymmetric/Biological Unit (7, 14)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003764991aENSE00001850808chr9:84304220-843031321089TLE1_HUMAN1-880--
1.2aENST000003764992aENSE00001761195chr9:84302349-84302249101TLE1_HUMAN9-42340--
1.3ENST000003764993ENSE00001720598chr9:84300811-8430074864TLE1_HUMAN42-63220--
1.4ENST000003764994ENSE00001757684chr9:84300635-8430059145TLE1_HUMAN64-78150--
1.5ENST000003764995ENSE00001766286chr9:84268951-8426888963TLE1_HUMAN79-99210--
1.6aENST000003764996aENSE00001627904chr9:84267203-8426712975TLE1_HUMAN100-124250--
1.7aENST000003764997aENSE00001763033chr9:84249216-84249012205TLE1_HUMAN125-193690--
1.8ENST000003764998ENSE00001647415chr9:84248279-8424826317TLE1_HUMAN193-19860--
1.9bENST000003764999bENSE00002194124chr9:84235472-84235356117TLE1_HUMAN199-237390--
1.10ENST0000037649910ENSE00001727081chr9:84231614-8423156154TLE1_HUMAN238-255180--
1.11bENST0000037649911bENSE00001593094chr9:84231049-84230897153TLE1_HUMAN256-306510--
1.12cENST0000037649912cENSE00001593668chr9:84228436-84228292145TLE1_HUMAN307-355490--
1.14bENST0000037649914bENSE00001742393chr9:84226874-84226684191TLE1_HUMAN355-418640--
1.15ENST0000037649915ENSE00001691307chr9:84225211-8422513577TLE1_HUMAN419-444262A:434-444
B:434-444
11
11
1.17ENST0000037649917ENSE00001694782chr9:84208189-84207940250TLE1_HUMAN444-527842A:444-527
B:444-527 (gaps)
84
84
1.18aENST0000037649918aENSE00001728569chr9:84205967-84205720248TLE1_HUMAN528-610832A:528-610 (gaps)
B:528-610 (gaps)
83
83
1.19ENST0000037649919ENSE00001646911chr9:84202743-84202596148TLE1_HUMAN610-659502A:610-659
B:610-659
50
50
1.20ENST0000037649920ENSE00001607617chr9:84200570-84200420151TLE1_HUMAN660-710512A:660-710
B:660-710 (gaps)
51
51
1.21ENST0000037649921ENSE00001644386chr9:84199439-8419936377TLE1_HUMAN710-735262A:710-735
B:710-735
26
26
1.22bENST0000037649922bENSE00001927275chr9:84199220-84198598623TLE1_HUMAN736-770352A:736-770
B:736-770
35
35

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:335
 aligned with TLE1_HUMAN | Q04724 from UniProtKB/Swiss-Prot  Length:770

    Alignment length:337
                                   443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       
           TLE1_HUMAN   434 PNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 770
               SCOP domains d1gxra_ A: Groucho/tle1, C-terminal domain                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1gxrA00 A:434-770 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeee.....eee...............eeeeeeee.......eeee.....eeeee...eeeeee..........eeee.......eeeeee.....eeeeee...eeeeee...--.eeeeeee.....eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee...eeeeee....eeeeeee....eeeeee.....eeeeee....eeeee.....eeee......eeeeee.....eeeeee...eeeeee.....eeeeee....eeeeee.....eeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------WD_REPEATS_1   ---------------------------WD_REPEATS_1   ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.15  -----------------------------------------------------------------------------------Exon 1.18a  PDB: A:528-610 (gaps) UniProt: 528-610                                 -------------------------------------------------Exon 1.20  PDB: A:660-710 UniProt: 660-710         -------------------------Exon 1.22b  PDB: A:736-770          Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.17  PDB: A:444-527 UniProt: 444-527                                          ----------------------------------------------------------------------------------Exon 1.19  PDB: A:610-659 UniProt: 610-659        --------------------------------------------------Exon 1.21  PDB: A:710-735 ----------------------------------- Transcript 1 (2)
                 1gxr A 434 DYFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA--PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 770
                                   443       453       463       473       483       493       503       513       523       533       543       553       | -|      573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       
                                                                                                                                                         561  |                                                                                                                                                                                                              
                                                                                                                                                            564                                                                                                                                                                                                              

Chain B from PDB  Type:PROTEIN  Length:324
 aligned with TLE1_HUMAN | Q04724 from UniProtKB/Swiss-Prot  Length:770

    Alignment length:337
                                   443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       
           TLE1_HUMAN   434 PNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 770
               SCOP domains d1gxrb_ B: Grouch     o/tle1, C-terminal domain                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1gxrB00 B:434-770      YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eee.-----.ee...............eeeeeeee.......eeee.....eeeee...eeeeee...---....eeee.......eeeeee.....eeeeee...eeeeee..---.eeeeeee.....eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee....eeeeee......eeeee...eeeee.--...eeeee.....eeeeee.....eeeeee...eeeeee.....eeeeee....eeeeee.....eeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------WD_REPEATS_1   ---------------------------WD_REPEATS_1   ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.15  -----------------------------------------------------------------------------------Exon 1.18a  PDB: B:528-610 (gaps) UniProt: 528-610                                 -------------------------------------------------Exon 1.20  PDB: B:660-710 (gaps) UniProt: 660-710  -------------------------Exon 1.22b  PDB: B:736-770          Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.17  PDB: B:444-527 (gaps) UniProt: 444-527                                   ----------------------------------------------------------------------------------Exon 1.19  PDB: B:610-659 UniProt: 610-659        --------------------------------------------------Exon 1.21  PDB: B:710-735 ----------------------------------- Transcript 1 (2)
                 1gxr B 434 DYFQGAMGSKPAYSFHV-----MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISH---KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA---PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH--KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 770
                                   443      |  -  |    463       473       483       493       503       513|   |  523       533       543       553      |  -|      573       583       593       603       613       623       633       643       653       663       673       683 |  |  693       703       713       723       733       743       753       763       
                                          450   456                                                       514 518                                       560 564                                                                                                                      685  |                                                                                  
                                                                                                                                                                                                                                                                                        688                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GXR)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (TLE1_HUMAN | Q04724)
molecular function
    GO:0001106    RNA polymerase II transcription corepressor activity    Interacting selectively and non-covalently with an RNA polymerase II repressing transcription factor and also with the RNA polymerase II basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:0009887    animal organ morphogenesis    Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
    GO:1904837    beta-catenin-TCF complex assembly    The aggregation, arrangement and bonding together of a set of components to form a beta-catenin-TCF complex.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0043124    negative regulation of I-kappaB kinase/NF-kappaB signaling    Any process that stops, prevents, or reduces the frequency, rate or extent of -kappaB kinase/NF-kappaB signaling.
    GO:0030178    negative regulation of Wnt signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of the Wnt signaling pathway.
    GO:2000811    negative regulation of anoikis    Any process that stops, prevents or reduces the frequency, rate or extent of anoikis.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TLE1_HUMAN | Q047242ce8 2ce9 4om2 4om3 5mwj

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1GXR)