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(-) Description

Title :  SMC HINGE DOMAIN FROM T. MARITIMA WITH COILED COIL
 
Authors :  J. Lowe, C. Haering, K. Nasmyth
Date :  07 Apr 02  (Deposition) - 29 Apr 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Chromosome Segregation, Smc Dimerisation Domain, Anti Parallel Coiled Coil, Smc Proteins (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Haering, J. Lowe, A. Hochwagen, K. Nasmyth
Molecular Architecture Of Smc Proteins And The Yeast Cohesin Complex
Mol. Cell V. 9 773 2002
PubMed-ID: 11983169  |  Reference-DOI: 10.1016/S1097-2765(02)00515-4

(-) Compounds

Molecule 1 - CHROMOSOME SEGREGATION SMC PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector: PHIS17
    Fragment: HINGE DOMAIN RESIDUES 473-685
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Other Details: HINGE DOMAIN FROM T. MARITIMA, RESIDUES 473-685
    Strain: DSMZ 3109
    Synonym: SMC

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1GXL)

(-) Sites  (0, 0)

(no "Site" information available for 1GXL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GXL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GXL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GXL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GXL)

(-) Exons   (0, 0)

(no "Exon" information available for 1GXL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
 aligned with Q9X0R4_THEMA | Q9X0R4 from UniProtKB/TrEMBL  Length:1170

    Alignment length:205
                                   484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674     
         Q9X0R4_THEMA   475 KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
               SCOP domains d1gxla_ A: Smc hinge domain                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh....hhhhhhhhh.......eeee.hhh...hhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhh.eeeeeee............hhhhh..eeee.hhhh.....hhhhhhhhh..eeee.hhhhhhhhhhhh....eee.....ee.....eee.........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gxl A 475 KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
                                   484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674     


Chain B from PDB  Type:PROTEIN  Length:205
 aligned with Q9X0R4_THEMA | Q9X0R4 from UniProtKB/TrEMBL  Length:1170

    Alignment length:205
                                   484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674     
         Q9X0R4_THEMA   475 KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
               SCOP domains d1gxlb_ B: Smc hinge domain                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.......eeee.hhh.ee...hhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhh...eeeee............hhhhh..eeee....ee....hhhhhhhhh..eeee.hhhhhhhhhhhh....eee.....ee.....eeeee.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gxl B 475 KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
                                   484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674     


Chain C from PDB  Type:PROTEIN  Length:205
 aligned with Q9X0R4_THEMA | Q9X0R4 from UniProtKB/TrEMBL  Length:1170

    Alignment length:205
                                   484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674     
         Q9X0R4_THEMA   475 KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
               SCOP domains d1gxlc_ C: Smc hinge domain                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh.hhhhhh....hhhhhhhhh.......eeee.hhh......hhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhh.eeeeeee............hhhhh..eeee.hhhh.....hhhhhhhhh..eeee.hhhhhhhhhhhh....eee.....ee.....eeeee.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gxl C 475 KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
                                   484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674     


Chain D from PDB  Type:PROTEIN  Length:198
 aligned with Q9X0R4_THEMA | Q9X0R4 from UniProtKB/TrEMBL  Length:1170

    Alignment length:198
                                   491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671        
         Q9X0R4_THEMA   482 IQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
               SCOP domains d1gxld_ D: Smc hinge domain                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....hhhhhhhhh.......eeee.hhh...hhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhh.eeeeeee............hhhhh..eeee.hhhh.....hhhhhhhhh..eeee.hhhhhhhhhhhh....eee.....ee.....eeeee.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1gxl D 482 IQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME 679
                                   491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1GXL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GXL)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9X0R4_THEMA | Q9X0R4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0030261    chromosome condensation    The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
    GO:0051276    chromosome organization    A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
    GO:0007059    chromosome segregation    The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
    GO:0007062    sister chromatid cohesion    The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other.
cellular component
    GO:0005694    chromosome    A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1gxl
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9X0R4_THEMA | Q9X0R4: 1e69 1gxj 1gxk

(-) Related Entries Specified in the PDB File

1e69 SMC HEAD DOMAIN FROM THERMOTOGA MARITIMA
1gxj SMC HINGE DOMAIN FROM T. MARITIMA W/O COILED COIL
1gxk SMC HINGE DOMAIN FROM T. MARITIMA W/O COILED COIL, P212121 CRYSTAL FORM