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(-) Description

Title :  GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR, ALPHA-ISOFORM
 
Authors :  I. Schalk, K. Zeng, S. -K. Wu, E. A. Stura, J. Metteson, M. Huang, A. Tandon, I. A. Wilson, W. E. Balch
Date :  10 Jul 96  (Deposition) - 12 Feb 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym./Biol. Unit :  A
Keywords :  Gtpase Activation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. Schalk, K. Zeng, S. K. Wu, E. A. Stura, J. Matteson, M. Huang, A. Tandon, I. A. Wilson, W. E. Balch
Structure And Mutational Analysis Of Rab Gdp-Dissociation Inhibitor.
Nature V. 381 42 1996
PubMed-ID: 8609986  |  Reference-DOI: 10.1038/381042A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System GeneBOVGDI
    Expression System PlasmidPET-11DHIS
    Expression System Taxid562
    GeneBOVGDI
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    Other DetailsALPHA-ISOFORM
    TissueBRAIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1GND)

(-) Sites  (0, 0)

(no "Site" information available for 1GND)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GND)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GND)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GND)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GND)

(-) Exons   (11, 11)

Asymmetric/Biological Unit (11, 11)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000160931ENSBTAE00000395537X:23762869-2376291951GDIA_BOVIN1-17171A:1-1717
1.2ENSBTAT000000160932ENSBTAE00000244799X:23763999-23764106108GDIA_BOVIN18-53361A:18-5336
1.3ENSBTAT000000160933ENSBTAE00000130996X:23764264-23764363100GDIA_BOVIN54-87341A:54-8734
1.4ENSBTAT000000160934ENSBTAE00000131001X:23764512-23764646135GDIA_BOVIN87-132461A:87-13246
1.5ENSBTAT000000160935ENSBTAE00000131002X:23765114-23765312199GDIA_BOVIN132-198671A:132-19867
1.6ENSBTAT000000160936ENSBTAE00000131007X:23765579-23765710132GDIA_BOVIN198-242451A:198-24245
1.7ENSBTAT000000160937ENSBTAE00000131011X:23766257-23766356100GDIA_BOVIN242-275341A:242-27534
1.8ENSBTAT000000160938ENSBTAE00000131012X:23766709-23766880172GDIA_BOVIN276-333581A:276-33358
1.9ENSBTAT000000160939ENSBTAE00000131015X:23767184-23767328145GDIA_BOVIN333-381491A:333-38149
1.10ENSBTAT0000001609310ENSBTAE00000131017X:23767454-2376750855GDIA_BOVIN381-399191A:381-39919
1.11ENSBTAT0000001609311ENSBTAE00000131035X:23767599-237686311033GDIA_BOVIN400-449501A:400-43031

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:430
 aligned with GDIA_BOVIN | P21856 from UniProtKB/Swiss-Prot  Length:447

    Alignment length:430
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
           GDIA_BOVIN     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFD 430
               SCOP domains d1gnda1 A:1-291,A:389-430 Guanine nucleotide dissociation inhibitor, GDI                                                                                                                                                                                                                           d1gnda2 A:292-388 Guanine nucleotide dissociation inhibitor, GDI                                 d1gnda1 A:1-291,A:389-430                  SCOP domains
               CATH domains 1gndA01 A:1-57,A:224-294,A:387-430                       1gndA02 A:58-118,A:295-386                                   1gndA03 A:119-223 Guanine Nucleotide Dissociation Inhibitor, domain 1                                    1gndA01 A:1-57,A:224-294,A:387-430  [code=3.50.50.60, no name defined] 1gndA02 A:58-118,A:295-386 Guanine Nucleotide Dissociation Inhibitor, domain 2              1gndA01 A:1-57,A:224-294,A:387-430           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...hhhhhhhhhhhh....eeee...............hhhhhhh........hhh..hhh..............hhhhhhhhh.hhh...eee..eeeeee..eeee....hhhh.......hhhhhhhhhhhhhhhh..................hhhhhhh....hhhhhhhhhh.......hhhh..hhhhhhhhhhhhh...hhh....eee...hhhhhhhhhhhhhhh..eee.................eee..eee...eeee.hhh.hhheeeeeeeeeeeeee............eeeee.hhhh.....eeeeeeehhh.......eeeeeeee.....hhhh.hhhhhh.....eeeeeeeeeeee........eee..........hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1         Exon 1.2  PDB: A:18-53              Exon 1.3  PDB: A:54-87            --------------------------------------------Exon 1.5  PDB: A:132-198 UniProt: 132-198                          -------------------------------------------Exon 1.7  PDB: A:242-275          Exon 1.8  PDB: A:276-333 UniProt: 276-333                 -----------------------------------------------Exon 1.10          Exon 1.11  PDB: A:400-430       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------Exon 1.4  PDB: A:87-132 UniProt: 87-132       -----------------------------------------------------------------Exon 1.6  PDB: A:198-242 UniProt: 198-242    ------------------------------------------------------------------------------------------Exon 1.9  PDB: A:333-381 UniProt: 333-381        ------------------------------------------------- Transcript 1 (2)
                 1gnd A   1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFD 430
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GND)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GDIA_BOVIN | P21856)
molecular function
    GO:0005092    GDP-dissociation inhibitor activity    Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding.
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0005093    Rab GDP-dissociation inhibitor activity    Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0032482    Rab protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
    GO:0050771    negative regulation of axonogenesis    Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis.
    GO:0090315    negative regulation of protein targeting to membrane    Any process that decreases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0050790    regulation of catalytic activity    Any process that modulates the activity of an enzyme.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030496    midbody    A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GDIA_BOVIN | P218561d5t 1lv0

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