1GJY - JenaLib

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Title :   THE X-RAY STRUCTURE OF THE SORCIN CALCIUM BINDING DOMAIN (SCBD) PROVIDES INSIGHT INTO THE PHOSPHORYLATION AND CALCIUM DEPENDENT PROCESSESS

Authors :   A. Ilari, K. A. Johnson, V. Nastopoulos, D. Tsernoglou, E. Chiancone

Date :   06 Aug 01 (Deposition) - 05 Apr 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Calcium Binding, Calcium-Binding, Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Ilari, K. Johnson, V. Nastopoulos, D. Verzili, C. Zamparelli, G. Colotti, D. Tsernoglou, E. Chiancone
The Crystal Structure Of The Sorcin Calcium Binding Domain Provides A Model Of Ca(2+)-Dependent Processes In The Full-Length Protein
J. Mol. Biol. V. 317 447 2002
PubMed-ID: 11922676 | Reference-DOI: 10.1006/JMBI.2002.5417
(for further references see the PDB file header)

Molecule 1 - SORCIN
	Chains	:	A, B, C, D
	Organism Common	:	CHINESE HAMSTER
	Organism Scientific	:	CHINESE HAMSTER
	Organism Taxid	:	10029
	Synonym	:	CP-22, V19

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 5)

No.	Name	Count	Type	Full Name
1	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:84 , SER A:172 , ARG A:175 , ARG A:176 , HOH A:2059 , HOH D:2016	BINDING SITE FOR RESIDUE SO4 A 200
2	AC2	SOFTWARE	ARG B:175 , ARG B:176	BINDING SITE FOR RESIDUE SO4 B 200
3	AC3	SOFTWARE	SER C:172 , ARG C:175 , ARG C:176 , HOH C:2086	BINDING SITE FOR RESIDUE SO4 C 200
4	AC4	SOFTWARE	MET C:32 , ARG C:106 , GLN C:107 , ARG C:116	BINDING SITE FOR RESIDUE SO4 C 201
5	AC5	SOFTWARE	MET D:86 , SER D:172 , ARG D:175 , ARG D:176	BINDING SITE FOR RESIDUE SO4 D 200

(no "SS Bond" information available for 1GJY)

(no "Cis Peptide Bond" information available for 1GJY)

(no "SAP(SNP)/Variant" information available for 1GJY)

Asymmetric Unit (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	SORCN_CRIGR	45-64 100-135 70-98 151-169	16	A:45-64 B:45-64 C:45-64 D:45-64 A:100-135 B:100-135 C:100-135 D:100-135 A:70-98 B:70-98 C:70-98 D:70-98 A:151-169 B:151-169 C:151-169 D:151-169
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	SORCN_CRIGR	83-95 113-125	8	A:83-95 B:83-95 C:83-95 D:83-95 A:113-125 B:113-125 C:113-125 D:113-125

Biological Unit 1 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	SORCN_CRIGR	45-64 100-135 70-98 151-169	8	A:45-64 B:45-64 - - A:100-135 B:100-135 - - A:70-98 B:70-98 - - A:151-169 B:151-169 - -
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	SORCN_CRIGR	83-95 113-125	4	A:83-95 B:83-95 - - A:113-125 B:113-125 - -

Biological Unit 2 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	SORCN_CRIGR	45-64 100-135 70-98 151-169	8	- - C:45-64 D:45-64 - - C:100-135 D:100-135 - - C:70-98 D:70-98 - - C:151-169 D:151-169
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	SORCN_CRIGR	83-95 113-125	4	- - C:83-95 D:83-95 - - C:113-125 D:113-125

(no "Exon" information available for 1GJY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:167
 aligned with SORCN_CRIGR | P05044 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:167
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       
          SORCN_CRIGR    32 QDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
               SCOP domains d1gjya_ A: Sorcin                                                                                                                                                       SCOP domains
               CATH domains 1gjyA00 A:32-198 EF-hand                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh......hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------EF_HAND_2           -----EF_HAND_2  PDB: A:70-98      -EF_HAND_2  PDB: A:100-135           ---------------EF_HAND_2          ----------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------EF_HAND_1    -----------------EF_HAND_1    ------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gjy A  32 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191

Chain B from PDB  Type:PROTEIN  Length:167
 aligned with SORCN_CRIGR | P05044 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:167
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       
          SORCN_CRIGR    32 QDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
               SCOP domains d1gjyb_ B: Sorcin                                                                                                                                                       SCOP domains
               CATH domains 1gjyB00 B:32-198 EF-hand                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh....eehhhhhhhhhhhhh........hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------EF_HAND_2           -----EF_HAND_2  PDB: B:70-98      -EF_HAND_2  PDB: B:100-135           ---------------EF_HAND_2          ----------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------EF_HAND_1    -----------------EF_HAND_1    ------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gjy B  32 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191

Chain C from PDB  Type:PROTEIN  Length:167
 aligned with SORCN_CRIGR | P05044 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:167
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       
          SORCN_CRIGR    32 QDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
               SCOP domains d1gjyc_ C: Sorcin                                                                                                                                                       SCOP domains
               CATH domains 1gjyC00 C:32-198 EF-hand                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh......hhhhhhhhhhhh.........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhh.......eeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------EF_HAND_2           -----EF_HAND_2  PDB: C:70-98      -EF_HAND_2  PDB: C:100-135           ---------------EF_HAND_2          ----------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------EF_HAND_1    -----------------EF_HAND_1    ------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gjy C  32 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191

Chain D from PDB  Type:PROTEIN  Length:167
 aligned with SORCN_CRIGR | P05044 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:167
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       
          SORCN_CRIGR    32 QDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
               SCOP domains d1gjyd_ D: Sorcin                                                                                                                                                       SCOP domains
               CATH domains 1gjyD00 D:32-198 EF-hand                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh....eehhhhhhhhhhhhh........hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhh....hhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------EF_HAND_2           -----EF_HAND_2  PDB: D:70-98      -EF_HAND_2  PDB: D:100-135           ---------------EF_HAND_2          ----------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------EF_HAND_1    -----------------EF_HAND_1    ------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gjy D  32 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 198
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: EF-hand (657)

Family: Penta-EF-hand proteins (30)

Protein domain: Sorcin (2)

Chinese hamster (Cricetulus griseus) [TaxId: 10029] (1)

1a	d1gjya_	A:
1b	d1gjyb_	B:
1c	d1gjyc_	C:
1d	d1gjyd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Recoverin; domain 1 (474)

Homologous Superfamily: EF-hand (412)

Chinese hamster (Chinese hamster) (1)

1a	1gjyA00	A:32-198
1b	1gjyB00	B:32-198
1c	1gjyC00	C:32-198
1d	1gjyD00	D:32-198

(no "Pfam Domain" information available for 1GJY)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (SORCN_CRIGR | P05044)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0016529	sarcoplasmic reticulum	A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage.
	GO:0033017	sarcoplasmic reticulum membrane	The lipid bilayer surrounding the sarcoplasmic reticulum.

Asymmetric Unit
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	1gjy
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